FvH4_6g53470

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006709
Physical Location & Seq
Reverse (-)
39193397 .. 39196189
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53470.t2

Sequence Viewer

Length: 1014 bp
ATGGCTTCCGTTCCCCTATCATCTCTCTCCCTCAATTCTCTCAGCAGCTTCACCTCCGCAGCTTCCGATTATTTAAGGTTTGCTTCTCCAACCTTCCAATTCAGCACCGTCACCAAGTTCCGCGGGGTTAGGTTCGCCGTGACCAGCAGAGCTTCCTCCGTCGTCTTCCGCAACCTCGACGCCGATGACTTCCGCCACCCTCTCGATAAACAGAACACGTTGATTTTGAGAGCGATTCCTGGACTAACTGAAATCGGAAAGGTTCTACTTGGATCTGTTACGGAGCAAGTGATGCTTCTTGAAAATATCGGAACATCCCTTCTTGTTTCGGAGAATCAGCTTTCTGATCTACATAAATTGATGGTTGAAGCCGCGGACATACTCAACATTGATGCTCCTGATCTATATGTTCGTCAAAGTCCTGTACCAAATGCATACACGTTAGCTATAAGTGGTAAAAAGCCATTTGTTGTTATCCATACTAGCCTAGTGGAGCTTTTGACAAGAGAAGAGTTGCAGGCGGTTTTGGCTCATGAGTTGGGTCATTTGAAATGCGACCATGGTGTGTGGCTTACATTTGCGAATATCCTTACCCTCGGAGCTTATACCATACCTGGGCTTGGTGGCATGATTGCTCAGAGTTTAGAAGAGCAGTTATTTCGTTGGCTTCGAGCAGCGGAACTAACTTGTGATCGTGCGGCCCTTCTTGTTGCGCAAGACCCAAAGGTGGTCGTCTCTGTGTTGATGAAATTAGCTGGTGGGTGTCCATCTATGGCTGATCAACTAAATGTGGATGCATTTTTGGAACAAGCTCGCTCTTATGACAAGGCTTCCGCAAGCCCTGTAGGGTGGTATATAAGAAATGCACAAACGAGGCAACTTTCACATCCTTTGCCAGTGCTACGAGCTCGTGAAATTGATGAATGGTCAAGAAGCCAAGAGTACGGAACTCTTCTTAAACGAGCAACAAGGATCACGGCTGGATCAAAAGTTTTAACAACACCTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

338

Amino Acids

36.95

Weight (kDa)

7.76

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 115 - 202 3.3e-15 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 714
AccII CGCG 2 cut(s) 123, 374
AclWI GGATC 3 cut(s) 280, 980, 991
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 2 cut(s) 426, 944
AfiI CCNNNNNNNGG 3 cut(s) 615, 620, 727
AflIII ACRYGT 2 cut(s) 216, 438
AgsI TTSAA 3 cut(s) 302, 368, 550
AjnI CCWGG 3 cut(s) 238, 613, 1003
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 3 cut(s) 280, 980, 991
AoxI GGCC 1 cut(s) 699
ApeKI GCWGC 3 cut(s) 45, 59, 674
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 2 cut(s) 43, 103
BanII GRGCYC 1 cut(s) 910
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 3 cut(s) 57, 71, 686
BccI CCATC 2 cut(s) 355, 775
BceAI ACGGC 2 cut(s) 122, 993
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 3 cut(s) 240, 615, 1005
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 2 cut(s) 483, 488
BfmI CTRYAG 1 cut(s) 843
BisI GCNGC 5 cut(s) 46, 60, 372, 675, 699
BlsI GCNGC 5 cut(s) 47, 61, 373, 676, 700
Bme1390I CCNGG 3 cut(s) 240, 615, 1005
BmgT120I GGNCC 1 cut(s) 700
BmrFI CCNGG 3 cut(s) 240, 615, 1005
BmsI GCATC 3 cut(s) 282, 382, 784
BpiI GAAGAC 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 5 cut(s) 121, 372, 559, 595, 614
Bsc4I CCNNNNNNNGG 3 cut(s) 615, 620, 727
Bse1I ACTGG 1 cut(s) 896
BseBI CCWGG 3 cut(s) 240, 615, 1005
BseDI CCNNGG 5 cut(s) 121, 372, 559, 595, 614
BseGI GGATG 3 cut(s) 314, 799, 886
BseLI CCNNNNNNNGG 3 cut(s) 615, 620, 727
BseMII CTCAG 2 cut(s) 55, 650
BseNI ACTGG 1 cut(s) 896
BseXI GCAGC 3 cut(s) 57, 71, 686
Bsh1236I CGCG 2 cut(s) 123, 374
BshFI GGCC 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 910
BslI CCNNNNNNNGG 3 cut(s) 615, 620, 727
BsmAI GTCTC 1 cut(s) 739
BsmBI CGTCTC 1 cut(s) 739
BsnI GGCC 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 910
Bsp143I GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
Bsp19I CCATGG 1 cut(s) 559
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 2 cut(s) 54, 649
BspFNI CGCG 2 cut(s) 123, 374
BspHI TCATGA 1 cut(s) 532
BspPI GGATC 3 cut(s) 280, 980, 991
BspQI GCTCTTC 1 cut(s) 642
BsrI ACTGG 1 cut(s) 896
BssECI CCNNGG 5 cut(s) 121, 372, 559, 595, 614
BssMI GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
BssNI GRCGYC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 909
BssT1I CCWWGG 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 3 cut(s) 240, 615, 1005
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 3 cut(s) 504, 642, 957
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 519, 814, 838
BstDEI CTNAG 2 cut(s) 41, 636
BstDSI CCRYGG 3 cut(s) 121, 372, 559
BstF5I GGATG 3 cut(s) 314, 799, 886
BstFNI CGCG 2 cut(s) 123, 374
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 7 cut(s) 275, 349, 403, 694, 781, 975, 986
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
BstMWI GCNNNNNNNGC 2 cut(s) 292, 527
BstNI CCWGG 3 cut(s) 240, 615, 1005
BstSCI CCNGG 3 cut(s) 238, 613, 1003
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 2 cut(s) 123, 374
BstV1I GCAGC 3 cut(s) 57, 71, 686
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 701
BtgI CCRYGG 3 cut(s) 121, 372, 559
BtsCI GGATG 3 cut(s) 314, 799, 886
BtsIMutI CAGTG 1 cut(s) 903
Cac8I GCNNGC 3 cut(s) 519, 814, 838
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 1 cut(s) 700
Cfr42I CCGCGG 2 cut(s) 124, 375
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 425, 943
CviAII CATG 3 cut(s) 533, 560, 628
CviQI GTAC 2 cut(s) 425, 943
DdeI CTNAG 2 cut(s) 41, 636
DpnI GATC 7 cut(s) 274, 348, 402, 693, 780, 974, 985
DpnII GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
Eam1104I CTCTTC 3 cut(s) 504, 642, 957
EarI CTCTTC 3 cut(s) 504, 642, 957
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 908
Eco130I CCWWGG 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 910
Eco53kI GAGCTC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 908
EcoRII CCWGG 3 cut(s) 238, 613, 1003
EcoT14I CCWWGG 1 cut(s) 559
EcoT22I ATGCAT 2 cut(s) 436, 799
EcoT38I GRGCYC 1 cut(s) 910
ErhI CCWWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 739
FaeI CATG 3 cut(s) 536, 563, 631
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 279, 311
FatI CATG 3 cut(s) 532, 559, 627
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 5 cut(s) 46, 60, 372, 675, 699
FokI GGATG 3 cut(s) 301, 806, 873
FriOI GRGCYC 1 cut(s) 910
Fsp4HI GCNGC 5 cut(s) 46, 60, 372, 675, 699
FspBI CTAG 2 cut(s) 483, 488
FspI TGCGCA 1 cut(s) 714
GlaI GCGC 1 cut(s) 714
GluI GCNGC 5 cut(s) 46, 60, 372, 675, 699
HaeIII GGCC 1 cut(s) 701
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 3 cut(s) 536, 563, 631
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HinfI GANTC 2 cut(s) 235, 334
HphI GGTGA 2 cut(s) 43, 103
Hpy188I TCNGA 7 cut(s) 67, 257, 311, 331, 346, 599, 639
Hpy188III TCNNGA 6 cut(s) 203, 299, 398, 533, 911, 930
Hpy99I CGWCG 2 cut(s) 164, 182
HpyAV CCTTC 3 cut(s) 103, 329, 713
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 218, 440
HpyCH4V TGCA 4 cut(s) 434, 517, 797, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 527
HpyF3I CTNAG 2 cut(s) 41, 636
HpySE526I ACGT 2 cut(s) 218, 440
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 3 cut(s) 536, 563, 631
HspAI GCGC 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 778
KspI CCGCGG 2 cut(s) 124, 375
Kzo9I GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 4 cut(s) 283, 400, 493, 599
Lsp1109I GCAGC 3 cut(s) 57, 71, 686
LweI GCATC 3 cut(s) 282, 382, 784
MaeI CTAG 2 cut(s) 483, 488
MaeII ACGT 2 cut(s) 218, 440
MaeIII GTNAC 3 cut(s) 109, 139, 277
MalI GATC 7 cut(s) 274, 348, 402, 693, 780, 974, 985
MboI GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
MboII GAAGA 4 cut(s) 157, 521, 659, 944
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 910
MluCI AATT 5 cut(s) 34, 98, 356, 749, 915
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 41, 64, 166, 185, 210, 605, 867
Mph1103I ATGCAT 2 cut(s) 436, 799
MseI TTAA 3 cut(s) 74, 957, 995
MspA1I CMGCKG 3 cut(s) 123, 374, 677
MspR9I CCNGG 3 cut(s) 240, 615, 1005
MvaI CCWGG 3 cut(s) 240, 615, 1005
MvnI CGCG 2 cut(s) 123, 374
MwoI GCNNNNNNNGC 2 cut(s) 292, 527
NcoI CCATGG 1 cut(s) 559
NdeII GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
NlaIII CATG 3 cut(s) 536, 563, 631
NmuCI GTSAC 2 cut(s) 109, 139
NsbI TGCGCA 1 cut(s) 714
NsiI ATGCAT 2 cut(s) 436, 799
PagI TCATGA 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PfeI GAWTC 2 cut(s) 235, 334
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 5 cut(s) 47, 61, 373, 676, 700
Psp124BI GAGCTC 1 cut(s) 910
Psp6I CCWGG 3 cut(s) 238, 613, 1003
PspGI CCWGG 3 cut(s) 238, 613, 1003
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 2 cut(s) 426, 944
RsaNI GTAC 2 cut(s) 425, 943
SacI GAGCTC 1 cut(s) 910
SacII CCGCGG 2 cut(s) 124, 375
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 3 cut(s) 74, 957, 995
SatI GCNGC 5 cut(s) 46, 60, 372, 675, 699
Sau3AI GATC 7 cut(s) 272, 346, 400, 691, 778, 972, 983
Sau96I GGNCC 1 cut(s) 700
ScrFI CCNGG 3 cut(s) 240, 615, 1005
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 3 cut(s) 282, 382, 784
SfcI CTRYAG 1 cut(s) 843
Sfr303I CCGCGG 2 cut(s) 124, 375
SgrBI CCGCGG 2 cut(s) 124, 375
Sse9I AATT 5 cut(s) 34, 98, 356, 749, 915
SspMI CTAG 2 cut(s) 483, 488
SstI GAGCTC 1 cut(s) 910
StyD4I CCNGG 3 cut(s) 238, 613, 1003
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 2 cut(s) 221, 443
TaqI TCGA 3 cut(s) 177, 204, 670
TasI AATT 5 cut(s) 34, 98, 356, 749, 915
TauI GCSGC 2 cut(s) 374, 701
TfiI GAWTC 2 cut(s) 235, 334
Tru1I TTAA 3 cut(s) 74, 957, 995
Tru9I TTAA 3 cut(s) 74, 957, 995
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 2 cut(s) 109, 139
TseI GCWGC 3 cut(s) 45, 59, 674
Tsp45I GTSAC 2 cut(s) 109, 139
TspDTI ATGAA 2 cut(s) 761, 936
TspGWI ACGGA 3 cut(s) 148, 296, 960
TspRI CASTG 1 cut(s) 903
XspI CTAG 2 cut(s) 483, 488
Zsp2I ATGCAT 2 cut(s) 436, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.