Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006709

Physical Location & Seq

Genomic Coordinates Reverse (-)

26771635 .. 26776167

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G305800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTCCGTGTCCCTCTCTTCTCTGTGCCTGACGCAGAACCCTAATTCTATCAGTTTTAGCTCCATAGCTTCCGATCATGTGAGGTTTGGTTCACCTACTATTGAATTCGGCTCCGTCAAGAAGTATCGGAGAGATAGAGCTGTCGTCTGCAGAGCTTCCTCGGTTGTCTTTCGCAACCTCGATGCCGATGACTTTCGGCACCCTCTCGACAAACAGAACACGCTGATTTTGAGGGCGATTCCAGGATTGAATGAGCTTGGAAAGATTCTTCTAGGATCCGTTGCAGAGCAAGTCATGCTTCTGGAGAATATTGGAACATCCCTTCTTGTTTCTAAAGATCAGCTTTCTGGCCTACATCAATTGATGGTTGAGGCCGCGGAAATCCTCAATATTGATGCTCCTGATCTATATGTTCGTCAAAGTCCTGTACCAAATGCATATACCTTAGCAATAAGTGGTAAAAAGCCATTTGTTGTTGTTCATACTAGCCTTGTGGAGCTTTTGACTCGAGAAGAGTTACAGGCTGTTTTGGCTCATGAGTTGGGTCATCTCAAATGCGACCATGGTGTATGGCTGACATTTGCAAATATTCTTACCCTTGGAGCTTATACCATACCTGGGCTTGGTGGGATGATTGCTCAGAGTTTAGAAGAACAGTTATTTCGTTGGCTTCGAGCAGCAGAGCTAACTTGTGATCGTGCAGCCCTTCTTGTTGCACAAGACCCAAAGGTGGTCATCTCTGTTCTAATGAAATTAGCTGGGGGCTGCCCTTCTCTGGCTGATCAACTAAATGTGGATGCATTTTTGGAACAAGCTCGCTCCTATGACAAAGCTTCTTCAAGCCCAGTAGGGTGGTATATAAGAAATGCTCAAACGAGGCAACTTTCACATCCTCTGCCCGTTCTACGTGCTCGTGAAATTGATGAATGGTCAAGAAGTCAAGACTACACAACTCTTCTGAAACATGCAACACAGATCACTGGTGCAAAGAAAGTTTTAACAACACCAGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

340

Amino Acids

37.2

Weight (kDa)

7.7

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27110 AT3G27110 AT3G27110 AT3G27110 AT3G27110
fragaria_vesca	FvH4_6g53470 FvH4_6g53470 FvH4_6g53470
malus_domestica	MD09G1011200.v1.1
prunus_persica	Prupe.3G305800_v2.0.a1
pyrus_communis	pycom111g00950
rosa_chinensis	RchiOBHm_Chr2g0175511
rosa_laevigata	RLG00000022334
rosa_multiflora	Rmu_sc0008219.1_g000002 Rmu_sc0021955.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077250
rosa_rugosa	Rorug02G0585300 Rorug02G0585400 Rorug02G0585500 Rorug02G0585600 Rorug02G0585700
rosa_samantha	Rh2AG665000 Rh2BG675800 Rh2CG638900 Rh2DG689700
rosa_wichuraiana	Rw2G054500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AccII	CGCG	1 cut(s)	380
AciI	CCGC	2 cut(s)	378, 380
AclWI	GGATC	2 cut(s)	273, 286
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	4 cut(s)	621, 626, 733, 778
AgsI	TTSAA	3 cut(s)	107, 253, 843
AjnI	CCWGG	3 cut(s)	244, 619, 1009
Alw21I	GWGCWC	1 cut(s)	916
AlwI	GGATC	2 cut(s)	273, 286
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	2 cut(s)	352, 375
ApeKI	GCWGC	3 cut(s)	680, 704, 768
ApoI	RAATTY	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	915
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	3 cut(s)	692, 716, 755
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	3 cut(s)	246, 621, 1011
BclI	TGATCA	1 cut(s)	784
BfaI	CTAG	2 cut(s)	275, 489
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	4 cut(s)	378, 681, 705, 769
BlsI	GCNGC	4 cut(s)	379, 682, 706, 770
Bme1390I	CCNGG	3 cut(s)	246, 621, 1011
BmeT110I	CYCGRG	1 cut(s)	510
BmiI	GGNNCC	3 cut(s)	115, 203, 280
BmrFI	CCNGG	3 cut(s)	246, 621, 1011
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	3 cut(s)	175, 388, 790
BmuI	ACTGGG	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	5 cut(s)	162, 378, 565, 601, 620
Bsc4I	CCNNNNNNNGG	4 cut(s)	621, 626, 733, 778
Bse1I	ACTGG	2 cut(s)	848, 988
BseBI	CCWGG	3 cut(s)	246, 621, 1011
BseDI	CCNNGG	5 cut(s)	162, 378, 565, 601, 620
BseGI	GGATG	4 cut(s)	320, 639, 805, 892
BseLI	CCNNNNNNNGG	4 cut(s)	621, 626, 733, 778
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	2 cut(s)	848, 988
BseXI	GCAGC	3 cut(s)	692, 716, 755
BseYI	CCCAGC	1 cut(s)	761
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	354, 377
BshNI	GGYRCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	916
BsiHKCI	CYCGRG	1 cut(s)	510
BslI	CCNNNNNNNGG	4 cut(s)	621, 626, 733, 778
BsnI	GGCC	2 cut(s)	354, 377
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp143I	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	2 cut(s)	378, 380
BspANI	GGCC	2 cut(s)	354, 377
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	115, 203, 280
BspMAI	CTGCAG	1 cut(s)	155
BspPI	GGATC	2 cut(s)	273, 286
BspT107I	GGYRCC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	848, 988
BssECI	CCNNGG	5 cut(s)	162, 378, 565, 601, 620
BssMI	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
BssSI	CACGAG	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	565, 601
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	3 cut(s)	246, 621, 1011
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	3 cut(s)	25, 510, 963
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	2 cut(s)	448, 642
BstDSI	CCRYGG	2 cut(s)	378, 565
BstF5I	GGATG	4 cut(s)	320, 639, 805, 892
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	7 cut(s)	79, 281, 343, 409, 700, 787, 981
BstMBI	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 533
BstNI	CCWGG	3 cut(s)	246, 621, 1011
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	3 cut(s)	244, 619, 1009
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	692, 716, 755
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	354, 377
BtgI	CCRYGG	2 cut(s)	378, 565
BtsCI	GGATG	4 cut(s)	320, 639, 805, 892
BtsIMutI	CAGTG	1 cut(s)	981
Cac8I	GCNNGC	1 cut(s)	820
CciI	TCATGA	1 cut(s)	538
Cfr42I	CCGCGG	1 cut(s)	381
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	5 cut(s)	80, 298, 539, 566, 968
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	2 cut(s)	448, 642
DpnI	GATC	7 cut(s)	78, 280, 342, 408, 699, 786, 980
DpnII	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
Eam1104I	CTCTTC	3 cut(s)	25, 510, 963
EarI	CTCTTC	3 cut(s)	25, 510, 963
Eco130I	CCWWGG	2 cut(s)	565, 601
Eco88I	CYCGRG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	244, 619, 1009
EcoT14I	CCWWGG	2 cut(s)	565, 601
EcoT22I	ATGCAT	2 cut(s)	442, 805
ErhI	CCWWGG	2 cut(s)	565, 601
FaeI	CATG	5 cut(s)	83, 301, 542, 569, 971
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 330, 362
FatI	CATG	5 cut(s)	79, 297, 538, 565, 967
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	4 cut(s)	378, 681, 705, 769
FokI	GGATG	4 cut(s)	307, 646, 812, 879
Fsp4HI	GCNGC	4 cut(s)	378, 681, 705, 769
FspBI	CTAG	2 cut(s)	275, 489
GluI	GCNGC	4 cut(s)	378, 681, 705, 769
GsaI	CCCAGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	354, 377
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	5 cut(s)	83, 301, 542, 569, 971
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	3 cut(s)	241, 268, 508
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	4 cut(s)	76, 132, 645, 963
Hpy188III	TCNNGA	9 cut(s)	121, 209, 305, 404, 512, 539, 917, 936, 944
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	335, 719, 783
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	9 cut(s)	153, 287, 440, 587, 704, 719, 803, 971, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 533
HpyF3I	CTNAG	2 cut(s)	448, 642
HpySE526I	ACGT	1 cut(s)	910
Hsp92II	CATG	5 cut(s)	83, 301, 542, 569, 971
Ksp22I	TGATCA	1 cut(s)	784
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
LmnI	GCTCC	6 cut(s)	68, 119, 406, 499, 605, 827
Lsp1109I	GCAGC	3 cut(s)	692, 716, 755
LweI	GCATC	3 cut(s)	175, 388, 790
MaeI	CTAG	2 cut(s)	275, 489
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	7 cut(s)	78, 280, 342, 408, 699, 786, 980
MboI	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
MboII	GAAGA	6 cut(s)	12, 263, 527, 665, 831, 950
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	5 cut(s)	46, 107, 362, 755, 921
MlyI	GAGTC	1 cut(s)	502
Mph1103I	ATGCAT	2 cut(s)	442, 805
MseI	TTAA	1 cut(s)	1001
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	246, 621, 1011
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	3 cut(s)	246, 621, 1011
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	298, 533
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
NlaIII	CATG	5 cut(s)	83, 301, 542, 569, 971
NlaIV	GGNNCC	3 cut(s)	115, 203, 280
NsiI	ATGCAT	2 cut(s)	442, 805
NspI	RCATGY	1 cut(s)	971
PaeR7I	CTCGAG	1 cut(s)	510
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	241, 268
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	379, 682, 706, 770
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	911
Psp6I	CCWGG	3 cut(s)	244, 619, 1009
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	3 cut(s)	244, 619, 1009
PspN4I	GGNNCC	3 cut(s)	115, 203, 280
PstI	CTGCAG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SacII	CCGCGG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	1001
SatI	GCNGC	4 cut(s)	378, 681, 705, 769
Sau3AI	GATC	7 cut(s)	76, 278, 340, 406, 697, 784, 978
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	3 cut(s)	246, 621, 1011
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	3 cut(s)	175, 388, 790
SfcI	CTRYAG	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	510
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	46, 107, 362, 755, 921
SsiI	CCGC	2 cut(s)	378, 380
SspI	AATATT	3 cut(s)	313, 394, 592
SspMI	CTAG	2 cut(s)	275, 489
StyD4I	CCNGG	3 cut(s)	244, 619, 1009
StyI	CCWWGG	2 cut(s)	565, 601
TaaI	ACNGT	1 cut(s)	660
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	4 cut(s)	183, 210, 511, 676
TasI	AATT	5 cut(s)	46, 107, 362, 755, 921
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	241, 268
Tru1I	TTAA	1 cut(s)	1001
Tru9I	TTAA	1 cut(s)	1001
TscAI	CASTG	1 cut(s)	988
TseI	GCWGC	3 cut(s)	680, 704, 768
TspDTI	ATGAA	3 cut(s)	473, 767, 942
TspGWI	ACGGA	2 cut(s)	106, 271
TspRI	CASTG	1 cut(s)	988
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	971
XhoI	CTCGAG	1 cut(s)	510
XspI	CTAG	2 cut(s)	275, 489
Zsp2I	ATGCAT	2 cut(s)	442, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.