RLG00000022334

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006709
Physical Location & Seq
Reverse (-)
82659712 .. 82662330
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022334

Sequence Viewer

Length: 954 bp
ATGGCTTCCGTTCCCCTATCTTCTCTATCCCTCAACCACAACCCTACCTCTCTCAGCTTCACCTCCACAGCTTCCGATCACTTCAGGCTTGCTTCACCTACCTTTCAATTCGCCACCGTCAGCAAATTTCGCTGTGTCAGGTTCGCCGTGAGTTGCAGAGCTTCCTCCGTCGTCTTCCACAACCTTGACGCCGATGACTTCCGCCACCCTCTCGATAAACAGAACACGTTGATTTTGAGAGCAATTCCAGGACTAACTGAAGTTGGAAAGGTTCTACTAGGATCTGTTACGGAGCAAGTGATGCTTCTTGAGAATATCGGAACGTCCCTTCTTGTTTCTGAAAATCAGCTTTCTGATCTACATAAATTGATGGTTGAAGCCGCGGACATACTCAACATTGATGCTCCTGATCTATATGTTCGTCAAAGTCCTGTACCAAATGCATACACTTTAGCAATAAGTGGTAAAAAGCCATTTGTTGTTATCCATACTAGTCTAGTGGAGCTTTTGACACGAGAAGAGTTGCAGGCTGTTTTGGCTCATGAGTTGGGTCATTTGAAATGCGACCATGGTGTGTGGCTTACATTTGCAAATATCCTTACCCTTGGAGCTTATACCATACCTGGGCTTGGTGGCATGATTGCTCAGAGTTTAGAAGAGCAGTTATTTCGTTGGCTTCGAGCAGCAGAGCTAACCTGTGATCGTGCAGCCCTTCTTGTTGCTCAAGACCCAAAGGTGGTCGTCTCTGTGTTGATGAAACTAGCTGGCGGATGCCCATCTATGGCTGATCAACTAAATGTGGATGCATTTTTGGAACAAGCTCGCTCTTATGACAAAGCTTCTTCAAGCCCTGTAGGCTGGTATATAAGAAATGCACAAACGAGGCAACTTTCACATCCTTTGCCGTGTGAAAAGCCTCAAATAGCAGCAGCCAGCAGGGCGCTTGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

318

Amino Acids

34.54

Weight (kDa)

6.55

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 118 - 277 1.8e-16 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AciI CCGC 4 cut(s) 202, 381, 383, 768
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 67, 279
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 4 cut(s) 107, 377, 559, 846
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 247, 622
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 1 cut(s) 289
ApeKI GCWGC 4 cut(s) 683, 707, 926, 929
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 943
AsuHPI GGTGA 2 cut(s) 52, 87
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 695, 719, 938, 941
BccI CCATC 2 cut(s) 364, 784
BceAI ACGGC 2 cut(s) 131, 889
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 2 cut(s) 249, 624
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 748
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 4 cut(s) 278, 492, 497, 761
BfmI CTRYAG 1 cut(s) 852
BfoI RGCGCY 1 cut(s) 944
BglI GCCNNNNNGGC 2 cut(s) 855, 938
BisI GCNGC 5 cut(s) 381, 684, 708, 927, 930
BlsI GCNGC 5 cut(s) 382, 685, 709, 928, 931
Bme1390I CCNGG 2 cut(s) 249, 624
BmrFI CCNGG 2 cut(s) 249, 624
BmsI GCATC 4 cut(s) 291, 391, 761, 793
BpiI GAAGAC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 329, 708
BsaBI GATNNNNATC 1 cut(s) 775
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 381, 568, 604, 623
Bsc4I CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 2 cut(s) 249, 624
BseDI CCNNGG 4 cut(s) 381, 568, 604, 623
BseGI GGATG 3 cut(s) 776, 808, 895
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
BseMII CTCAG 2 cut(s) 67, 659
BseXI GCAGC 4 cut(s) 695, 719, 938, 941
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
BsmAI GTCTC 1 cut(s) 748
BsmBI CGTCTC 1 cut(s) 748
BsmFI GGGAC 1 cut(s) 310
Bsp143I GATC 6 cut(s) 76, 281, 355, 409, 700, 787
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 4 cut(s) 202, 381, 383, 768
BspCNI CTCAG 2 cut(s) 66, 658
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 541
BspPI GGATC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 651
BssECI CCNNGG 4 cut(s) 381, 568, 604, 623
BssMI GATC 6 cut(s) 76, 281, 355, 409, 700, 787
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 568, 604
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 249, 624
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 513, 651
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 5 cut(s) 90, 528, 766, 823, 934
BstDEI CTNAG 2 cut(s) 53, 645
BstDSI CCRYGG 2 cut(s) 381, 568
BstF5I GGATG 3 cut(s) 776, 808, 895
BstFNI CGCG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 944
BstHHI GCGC 1 cut(s) 943
BstKTI GATC 6 cut(s) 79, 284, 358, 412, 703, 790
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 6 cut(s) 76, 281, 355, 409, 700, 787
BstMWI GCNNNNNNNGC 5 cut(s) 129, 301, 536, 855, 938
BstNI CCWGG 2 cut(s) 249, 624
BstSCI CCNGG 2 cut(s) 247, 622
BstSFI CTRYAG 1 cut(s) 852
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 4 cut(s) 695, 719, 938, 941
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 381, 568
BtsCI GGATG 3 cut(s) 776, 808, 895
Cac8I GCNNGC 5 cut(s) 90, 528, 766, 823, 934
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 943
Cfr42I CCGCGG 1 cut(s) 384
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 542, 569, 637
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 6 cut(s) 78, 283, 357, 411, 702, 789
DpnII GATC 6 cut(s) 76, 281, 355, 409, 700, 787
Eam1104I CTCTTC 2 cut(s) 513, 651
EarI CTCTTC 2 cut(s) 513, 651
EciI GGCGGA 2 cut(s) 191, 783
Eco130I CCWWGG 2 cut(s) 568, 604
Eco57I CTGAAG 2 cut(s) 67, 279
EcoRII CCWGG 2 cut(s) 247, 622
EcoT14I CCWWGG 2 cut(s) 568, 604
EcoT22I ATGCAT 2 cut(s) 445, 808
ErhI CCWWGG 2 cut(s) 568, 604
Esp3I CGTCTC 1 cut(s) 748
FaeI CATG 3 cut(s) 545, 572, 640
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 541, 568, 636
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 5 cut(s) 381, 684, 708, 927, 930
FokI GGATG 3 cut(s) 783, 815, 882
Fsp4HI GCNGC 5 cut(s) 381, 684, 708, 927, 930
FspBI CTAG 4 cut(s) 278, 492, 497, 761
GlaI GCGC 1 cut(s) 942
GluI GCNGC 5 cut(s) 381, 684, 708, 927, 930
HaeII RGCGCY 1 cut(s) 944
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 943
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 545, 572, 640
Hin6I GCGC 1 cut(s) 941
HinP1I GCGC 1 cut(s) 941
HindIII AAGCTT 1 cut(s) 837
HphI GGTGA 2 cut(s) 52, 87
Hpy188I TCNGA 5 cut(s) 76, 320, 340, 355, 648
Hpy188III TCNNGA 5 cut(s) 212, 308, 407, 542, 725
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 338, 722
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 227, 323
HpyCH4V TGCA 7 cut(s) 156, 443, 526, 590, 707, 806, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 301, 536, 855, 938
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 2 cut(s) 227, 323
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 545, 572, 640
HspAI GCGC 1 cut(s) 941
Ksp22I TGATCA 1 cut(s) 787
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 6 cut(s) 76, 281, 355, 409, 700, 787
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 4 cut(s) 292, 409, 502, 608
Lsp1109I GCAGC 4 cut(s) 695, 719, 938, 941
LweI GCATC 4 cut(s) 291, 391, 761, 793
MaeI CTAG 4 cut(s) 278, 492, 497, 761
MaeII ACGT 2 cut(s) 227, 323
MaeIII GTNAC 1 cut(s) 286
MalI GATC 6 cut(s) 78, 283, 357, 411, 702, 789
MboI GATC 6 cut(s) 76, 281, 355, 409, 700, 787
MboII GAAGA 5 cut(s) 12, 166, 530, 668, 834
MflI RGATCY 1 cut(s) 281
MluCI AATT 4 cut(s) 107, 125, 243, 365
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 7 cut(s) 41, 58, 73, 175, 219, 876, 927
Mph1103I ATGCAT 2 cut(s) 445, 808
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 249, 624
MvaI CCWGG 2 cut(s) 249, 624
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 129, 301, 536, 855, 938
NcoI CCATGG 1 cut(s) 568
NdeII GATC 6 cut(s) 76, 281, 355, 409, 700, 787
NlaIII CATG 3 cut(s) 545, 572, 640
NsiI ATGCAT 2 cut(s) 445, 808
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 5 cut(s) 382, 685, 709, 928, 931
Psp6I CCWGG 2 cut(s) 247, 622
PspGI CCWGG 2 cut(s) 247, 622
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SacII CCGCGG 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 651
SatI GCNGC 5 cut(s) 381, 684, 708, 927, 930
Sau3AI GATC 6 cut(s) 76, 281, 355, 409, 700, 787
ScrFI CCNGG 2 cut(s) 249, 624
SfaNI GCATC 4 cut(s) 291, 391, 761, 793
SfcI CTRYAG 1 cut(s) 852
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 308, 723
SmoI CTYRAG 2 cut(s) 308, 723
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 4 cut(s) 107, 125, 243, 365
SsiI CCGC 4 cut(s) 202, 381, 383, 768
SspMI CTAG 4 cut(s) 278, 492, 497, 761
StyD4I CCNGG 2 cut(s) 247, 622
StyI CCWWGG 2 cut(s) 568, 604
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 230, 326
TaqI TCGA 2 cut(s) 213, 679
TasI AATT 4 cut(s) 107, 125, 243, 365
TauI GCSGC 1 cut(s) 383
TseI GCWGC 4 cut(s) 683, 707, 926, 929
TspDTI ATGAA 1 cut(s) 770
TspGWI ACGGA 2 cut(s) 157, 305
XapI RAATTY 1 cut(s) 125
XspI CTAG 4 cut(s) 278, 492, 497, 761
Zsp2I ATGCAT 2 cut(s) 445, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.