Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008219.1

Orthogroup ID

OG0006709

Physical Location & Seq

Genomic Coordinates Reverse (-)

5081 .. 6452

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008219.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggttgaagccgcggacatactcaacattgatgctcctgatttatatgttcgtcaaagtcctgtaccaaatgcatacactttagcaataagtggtaaaaagccatttgttgttatccatactagtctagtggagcttttgacacgagaagagttgcaggctgttttggctcatgagttgggtcatttgaaatgcgaccatggtgtgtggcttacatttgcaaatatccttacccttggagcttataccatacctgggcttggtggcatgattgctcagagtttagaagagcagttatttcgttggcttcgagcagcagagctaacctgtgatcgtgcagcccttcttgttgctcaagacccaaaggtggtcgtctctgtgttgatgaaactagctggtggatgcccatctatggctgatcaactaaatgtggatgcatttttggaacaagctcgctcttatgacaaagcttcttcaagccctgtaggctggtatataagaaatgcacaaacgaggcaactttcacatcctttgccggtactacgagctcgtgaaattgatacatggtcaagaagtcaagagtacagaactcttttaaaacgagcaacacagatcactgctggatcaaaatttttaacaacacctggaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

217

Amino Acids

23.97

Weight (kDa)

7.75

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27110 AT3G27110 AT3G27110 AT3G27110 AT3G27110
fragaria_vesca	FvH4_6g53470 FvH4_6g53470 FvH4_6g53470
malus_domestica	MD09G1011200.v1.1
prunus_persica	Prupe.3G305800_v2.0.a1
pyrus_communis	pycom111g00950
rosa_chinensis	RchiOBHm_Chr2g0175511
rosa_laevigata	RLG00000022334
rosa_multiflora	Rmu_sc0008219.1_g000002 Rmu_sc0021955.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077250
rosa_rugosa	Rorug02G0585300 Rorug02G0585400 Rorug02G0585500 Rorug02G0585600 Rorug02G0585700
rosa_samantha	Rh2AG665000 Rh2BG675800 Rh2CG638900 Rh2DG689700
rosa_wichuraiana	Rw2G054500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	12, 14
AclWI	GGATC	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	3 cut(s)	66, 540, 584
AfiI	CCNNNNNNNGG	4 cut(s)	255, 260, 367, 412
AgsI	TTSAA	3 cut(s)	8, 190, 477
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	2 cut(s)	253, 643
AluBI	AGCT	7 cut(s)	136, 242, 322, 395, 452, 470, 548
AluI	AGCT	7 cut(s)	136, 242, 322, 395, 452, 470, 548
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	314, 338
ApoI	RAATTY	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	2 cut(s)	144, 549
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	326, 350
BccI	CCATC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	2 cut(s)	255, 645
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	379
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	3 cut(s)	123, 128, 392
BfmI	CTRYAG	1 cut(s)	483
BglI	GCCNNNNNGGC	1 cut(s)	486
BisI	GCNGC	3 cut(s)	12, 315, 339
BlsI	GCNGC	3 cut(s)	13, 316, 340
Bme1390I	CCNGG	2 cut(s)	255, 645
BmrFI	CCNGG	2 cut(s)	255, 645
BmsI	GCATC	3 cut(s)	22, 392, 424
BpuEI	CTTGAG	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	406
BsaJI	CCNNGG	4 cut(s)	12, 199, 235, 254
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 260, 367, 412
Bse118I	RCCGGY	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	255, 645
BseDI	CCNNGG	4 cut(s)	12, 199, 235, 254
BseGI	GGATG	3 cut(s)	407, 439, 526
BseJI	GATNNNNATC	1 cut(s)	406
BseLI	CCNNNNNNNGG	4 cut(s)	255, 260, 367, 412
BseMII	CTCAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	326, 350
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	255, 260, 367, 412
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	331, 418, 612, 623
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	2 cut(s)	12, 14
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	172
BspPI	GGATC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	4 cut(s)	12, 199, 235, 254
BssMI	GATC	4 cut(s)	331, 418, 612, 623
BssSI	CACGAG	2 cut(s)	144, 549
BssT1I	CCWWGG	2 cut(s)	199, 235
Bst2BI	CACGAG	2 cut(s)	144, 549
Bst2UI	CCWGG	2 cut(s)	255, 645
Bst6I	CTCTTC	2 cut(s)	144, 282
BstC8I	GCNNGC	2 cut(s)	159, 454
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	2 cut(s)	12, 199
BstF5I	GGATG	3 cut(s)	407, 439, 526
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	4 cut(s)	334, 421, 615, 626
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	331, 418, 612, 623
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 486
BstNI	CCWGG	2 cut(s)	255, 645
BstSCI	CCNGG	2 cut(s)	253, 643
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	326, 350
BtgI	CCRYGG	2 cut(s)	12, 199
BtsCI	GGATG	3 cut(s)	407, 439, 526
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	159, 454
CciI	TCATGA	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	535
Cfr42I	CCGCGG	1 cut(s)	15
Csp6I	GTAC	3 cut(s)	65, 539, 583
CviAII	CATG	4 cut(s)	173, 200, 268, 564
CviQI	GTAC	3 cut(s)	65, 539, 583
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	4 cut(s)	333, 420, 614, 625
DpnII	GATC	4 cut(s)	331, 418, 612, 623
DraI	TTTAAA	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	144, 282
EarI	CTCTTC	2 cut(s)	144, 282
Ecl136II	GAGCTC	1 cut(s)	548
Eco130I	CCWWGG	2 cut(s)	199, 235
Eco24I	GRGCYC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	253, 643
EcoT14I	CCWWGG	2 cut(s)	199, 235
EcoT22I	ATGCAT	2 cut(s)	76, 439
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	199, 235
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	4 cut(s)	176, 203, 271, 567
FatI	CATG	4 cut(s)	172, 199, 267, 563
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	12, 315, 339
FokI	GGATG	3 cut(s)	414, 446, 513
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	12, 315, 339
FspBI	CTAG	3 cut(s)	123, 128, 392
GluI	GCNGC	3 cut(s)	12, 315, 339
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	4 cut(s)	176, 203, 271, 567
HindIII	AAGCTT	1 cut(s)	468
HpaII	CCGG	1 cut(s)	536
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	6 cut(s)	38, 173, 356, 551, 570, 578
HpyAV	CCTTC	1 cut(s)	353
HpyCH4V	TGCA	6 cut(s)	74, 157, 221, 338, 437, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 486
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	176, 203, 271, 567
Ksp22I	TGATCA	1 cut(s)	418
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	331, 418, 612, 623
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	40, 133, 239
Lsp1109I	GCAGC	2 cut(s)	326, 350
LweI	GCATC	3 cut(s)	22, 392, 424
MaeI	CTAG	3 cut(s)	123, 128, 392
MalI	GATC	4 cut(s)	333, 420, 614, 625
MboI	GATC	4 cut(s)	331, 418, 612, 623
MboII	GAAGA	3 cut(s)	161, 299, 465
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	2 cut(s)	555, 629
MnlI	CCTC	1 cut(s)	507
Mph1103I	ATGCAT	2 cut(s)	76, 439
MseI	TTAA	2 cut(s)	596, 635
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	2 cut(s)	255, 645
MvaI	CCWGG	2 cut(s)	255, 645
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	167, 486
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	331, 418, 612, 623
NlaIII	CATG	4 cut(s)	176, 203, 271, 567
NsiI	ATGCAT	2 cut(s)	76, 439
PagI	TCATGA	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	13, 316, 340
Psp124BI	GAGCTC	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	253, 643
PspGI	CCWGG	2 cut(s)	253, 643
RsaI	GTAC	3 cut(s)	66, 540, 584
RsaNI	GTAC	3 cut(s)	65, 539, 583
SacI	GAGCTC	1 cut(s)	550
SacII	CCGCGG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	596, 635
SatI	GCNGC	3 cut(s)	12, 315, 339
Sau3AI	GATC	4 cut(s)	331, 418, 612, 623
ScrFI	CCNGG	2 cut(s)	255, 645
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	22, 392, 424
SfcI	CTRYAG	1 cut(s)	483
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	2 cut(s)	555, 629
SsiI	CCGC	2 cut(s)	12, 14
SspMI	CTAG	3 cut(s)	123, 128, 392
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	253, 643
StyI	CCWWGG	2 cut(s)	199, 235
TaqI	TCGA	1 cut(s)	310
TasI	AATT	2 cut(s)	555, 629
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	596, 635
Tru9I	TTAA	2 cut(s)	596, 635
TscAI	CASTG	1 cut(s)	622
TseI	GCWGC	2 cut(s)	314, 338
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	622
XapI	RAATTY	1 cut(s)	629
XspI	CTAG	3 cut(s)	123, 128, 392
Zsp2I	ATGCAT	2 cut(s)	76, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.