RchiOBHm_Chr2g0175511

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006709
Physical Location & Seq
Reverse (-)
87693916 .. 87696895
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54258

Sequence Viewer

Length: 1023 bp
ATGGCTTCCGTTCCCCTATCTTCTCTCTCCCTCAACCACAACCCTACCTCTCTCAGCTTCATCTCCACAGCTTCAGATCACTTCAGGCTTGCTTCACCTACCTTTCAATTCGCCACCGTCAGCAAATTTCGCTGCGTCAGGTTCGCCGTGAGTTGCAGAGCTTCCTCCGTCGTCTTCCACAACCTCGACGCCGATGACTTCCGCCACCCTCTCGATAAACAGAATACGTTGATTTTGAGAGCGATTCCAGGACTAACTGAAGTTGGAAAGGTTCTACTAGGATCTGTTACGGAGCAAGTGATGCTTCTTGAGAATATCGGAACGTCCCTTCTTGTTTCGGAAAATCAGCTTTCTGATCTACATAAATTGATGGTTGAAGCCGCGGACATACTCAACATTGATGCTCCTGATTTATATGTTCGTCAAAGTCCTGTACCAAATGCATACACTTTAGCAATAAGTGGTAAAAAGCCATTTGTTGTTATCCATACTAGTCTAGTGGAGCTTTTGACACGAGAAGAGTTGCAGGCTGTTTTGGCTCATGAGTTGGGTCATTTGAAATGCGACCATGGTGTGTGGCTTACATTTGCAAATATCCTTACCCTTGGAGCTTATACCATACCTGGGCTTGGTGGCATGATTGCTCAGAGTTTAGAAGAGCAGTTATTTCGTTGGCTTCGAGCAGCAGAGCTAACCTGTGATCGTGCAGCCCTTCTTGTTGCTCAAGACCCAAAGGTGGTCGTCTCTGTGTTGATGAAACTAGCTGGTGGATGCCCATCTATGGCTGATCAACTAAATGTGGATGCATTTTTGGAACAAGCTCGCTCTTATGACAAAGCTTCTTCAAGCCCTGTAGGCTGGTATATAAGAAATGCACAAACGAGGCAACTTTCACATCCTTTGCCAGTACTACGAGCTCGTGAAATTGATACATGGTCAAGAAGTCAAGAGTACAGAACTCTTCTAAAACGAGCAACACAGATCACTGCTGGATCAAAAATTTTAACAACACCTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

340

Amino Acids

37.38

Weight (kDa)

7.72

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 118 - 312 2.8e-18 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AciI CCGC 3 cut(s) 202, 381, 383
AclWI GGATC 2 cut(s) 289, 1000
AcsI RAATTY 2 cut(s) 125, 999
AcuI CTGAAG 3 cut(s) 57, 67, 279
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 3 cut(s) 435, 909, 953
AfiI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
AgsI TTSAA 4 cut(s) 107, 377, 559, 846
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 3 cut(s) 247, 622, 1012
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 2 cut(s) 289, 1000
ApeKI GCWGC 3 cut(s) 132, 683, 707
ApoI RAATTY 2 cut(s) 125, 999
AsuHPI GGTGA 1 cut(s) 87
BanII GRGCYC 1 cut(s) 919
BauI CACGAG 2 cut(s) 513, 918
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 3 cut(s) 119, 695, 719
BccI CCATC 2 cut(s) 364, 784
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 3 cut(s) 249, 624, 1014
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 748
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 4 cut(s) 278, 492, 497, 761
BfmI CTRYAG 1 cut(s) 852
BglI GCCNNNNNGGC 1 cut(s) 855
BisI GCNGC 4 cut(s) 133, 381, 684, 708
BlsI GCNGC 4 cut(s) 134, 382, 685, 709
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 3 cut(s) 249, 624, 1014
BmrFI CCNGG 3 cut(s) 249, 624, 1014
BmsI GCATC 4 cut(s) 291, 391, 761, 793
BpiI GAAGAC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 329, 708
BsaBI GATNNNNATC 1 cut(s) 775
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 381, 568, 604, 623
Bsc4I CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
Bse1I ACTGG 1 cut(s) 905
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 3 cut(s) 249, 624, 1014
BseDI CCNNGG 4 cut(s) 381, 568, 604, 623
BseGI GGATG 3 cut(s) 776, 808, 895
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
BseMII CTCAG 2 cut(s) 67, 659
BseNI ACTGG 1 cut(s) 905
BseXI GCAGC 3 cut(s) 119, 695, 719
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 919
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
BsmAI GTCTC 1 cut(s) 748
BsmBI CGTCTC 1 cut(s) 748
BsmFI GGGAC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 3 cut(s) 202, 381, 383
BspCNI CTCAG 2 cut(s) 66, 658
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 541
BspPI GGATC 2 cut(s) 289, 1000
BspQI GCTCTTC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 905
BssECI CCNNGG 4 cut(s) 381, 568, 604, 623
BssMI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 2 cut(s) 513, 918
BssT1I CCWWGG 2 cut(s) 568, 604
Bst2BI CACGAG 2 cut(s) 513, 918
Bst2UI CCWGG 3 cut(s) 249, 624, 1014
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 3 cut(s) 513, 651, 966
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 90, 528, 823
BstDEI CTNAG 2 cut(s) 53, 645
BstDSI CCRYGG 2 cut(s) 381, 568
BstF5I GGATG 3 cut(s) 776, 808, 895
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 7 cut(s) 79, 284, 358, 703, 790, 984, 995
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
BstMWI GCNNNNNNNGC 4 cut(s) 129, 301, 536, 855
BstNI CCWGG 3 cut(s) 249, 624, 1014
BstSCI CCNGG 3 cut(s) 247, 622, 1012
BstSFI CTRYAG 1 cut(s) 852
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 3 cut(s) 119, 695, 719
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 381, 568
BtsCI GGATG 3 cut(s) 776, 808, 895
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 1 cut(s) 984
Cac8I GCNNGC 3 cut(s) 90, 528, 823
CciI TCATGA 1 cut(s) 541
Cfr42I CCGCGG 1 cut(s) 384
CseI GACGC 2 cut(s) 124, 197
Csp6I GTAC 3 cut(s) 434, 908, 952
CviAII CATG 4 cut(s) 542, 569, 637, 933
CviQI GTAC 3 cut(s) 434, 908, 952
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 7 cut(s) 78, 283, 357, 702, 789, 983, 994
DpnII GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
Eam1104I CTCTTC 3 cut(s) 513, 651, 966
EarI CTCTTC 3 cut(s) 513, 651, 966
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 2 cut(s) 568, 604
Eco24I GRGCYC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 3 cut(s) 57, 67, 279
EcoICRI GAGCTC 1 cut(s) 917
EcoRII CCWGG 3 cut(s) 247, 622, 1012
EcoT14I CCWWGG 2 cut(s) 568, 604
EcoT22I ATGCAT 2 cut(s) 445, 808
EcoT38I GRGCYC 1 cut(s) 919
ErhI CCWWGG 2 cut(s) 568, 604
Esp3I CGTCTC 1 cut(s) 748
FaeI CATG 4 cut(s) 545, 572, 640, 936
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 310
FatI CATG 4 cut(s) 541, 568, 636, 932
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 4 cut(s) 133, 381, 684, 708
FokI GGATG 3 cut(s) 783, 815, 882
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 4 cut(s) 133, 381, 684, 708
FspBI CTAG 4 cut(s) 278, 492, 497, 761
GluI GCNGC 4 cut(s) 133, 381, 684, 708
HgaI GACGC 2 cut(s) 124, 197
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 4 cut(s) 545, 572, 640, 936
HindIII AAGCTT 1 cut(s) 837
HinfI GANTC 1 cut(s) 244
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 5 cut(s) 76, 320, 340, 355, 648
Hpy188III TCNNGA 8 cut(s) 212, 308, 407, 542, 725, 920, 939, 947
Hpy99I CGWCG 2 cut(s) 173, 191
HpyAV CCTTC 2 cut(s) 338, 722
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 227, 323
HpyCH4V TGCA 7 cut(s) 156, 443, 526, 590, 707, 806, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 301, 536, 855
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 2 cut(s) 227, 323
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 4 cut(s) 545, 572, 640, 936
Ksp22I TGATCA 1 cut(s) 787
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 4 cut(s) 292, 409, 502, 608
Lsp1109I GCAGC 3 cut(s) 119, 695, 719
LweI GCATC 4 cut(s) 291, 391, 761, 793
MaeI CTAG 4 cut(s) 278, 492, 497, 761
MaeII ACGT 2 cut(s) 227, 323
MaeIII GTNAC 1 cut(s) 286
MalI GATC 7 cut(s) 78, 283, 357, 702, 789, 983, 994
MboI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
MboII GAAGA 6 cut(s) 12, 166, 530, 668, 834, 953
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 5 cut(s) 107, 125, 365, 924, 999
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 41, 58, 175, 194, 219, 876
Mph1103I ATGCAT 2 cut(s) 445, 808
MseI TTAA 1 cut(s) 1004
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 3 cut(s) 249, 624, 1014
MvaI CCWGG 3 cut(s) 249, 624, 1014
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 4 cut(s) 129, 301, 536, 855
NcoI CCATGG 1 cut(s) 568
NdeII GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
NlaIII CATG 4 cut(s) 545, 572, 640, 936
NsiI ATGCAT 2 cut(s) 445, 808
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PfeI GAWTC 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 134, 382, 685, 709
Psp124BI GAGCTC 1 cut(s) 919
Psp6I CCWGG 3 cut(s) 247, 622, 1012
PspGI CCWGG 3 cut(s) 247, 622, 1012
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 3 cut(s) 435, 909, 953
RsaNI GTAC 3 cut(s) 434, 908, 952
SacI GAGCTC 1 cut(s) 919
SacII CCGCGG 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 1004
SatI GCNGC 4 cut(s) 133, 381, 684, 708
Sau3AI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
ScaI AGTACT 1 cut(s) 909
ScrFI CCNGG 3 cut(s) 249, 624, 1014
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 4 cut(s) 291, 391, 761, 793
SfcI CTRYAG 1 cut(s) 852
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 308, 723
SmoI CTYRAG 2 cut(s) 308, 723
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 5 cut(s) 107, 125, 365, 924, 999
SsiI CCGC 3 cut(s) 202, 381, 383
SspMI CTAG 4 cut(s) 278, 492, 497, 761
SstI GAGCTC 1 cut(s) 919
StyD4I CCNGG 3 cut(s) 247, 622, 1012
StyI CCWWGG 2 cut(s) 568, 604
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 230, 326
TaqI TCGA 3 cut(s) 186, 213, 679
TasI AATT 5 cut(s) 107, 125, 365, 924, 999
TatI WGTACW 2 cut(s) 907, 951
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 1004
Tru9I TTAA 1 cut(s) 1004
TscAI CASTG 1 cut(s) 991
TseI GCWGC 3 cut(s) 132, 683, 707
TspDTI ATGAA 2 cut(s) 49, 770
TspGWI ACGGA 2 cut(s) 157, 305
TspRI CASTG 1 cut(s) 991
XapI RAATTY 2 cut(s) 125, 999
XspI CTAG 4 cut(s) 278, 492, 497, 761
ZrmI AGTACT 1 cut(s) 909
Zsp2I ATGCAT 2 cut(s) 445, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.