Rorug02G0585600

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006709
Physical Location & Seq
Reverse (-)
70835815 .. 70838242
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0585600.1

Sequence Viewer

Length: 1128 bp
ATGGGTCGGTCACCGTGCTGTGACAAAGTCGGGTTAAAGAAAGGTCCGTGGACTCCAGAAGAAGACCAGAAGCTCTTGGCTTATATCGAAGAACATGGCCATGGAAGTTGGAGAGCCCTCCCAATCAAAGCTGGGCTTCAGAGATGTGGAAAGAGCTGTAGACTGAGATGGACTAATTATCTGAGACCAGATATCAAGAGGGGAAAATTTAGTTTGCAAGAAGAACAGACCATTATTCAACTCCATGCCCTCTTAGGCAACAGGTGGTCGGCGATAGCAACTCACTTGCCGAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTCAAGAAGCGCTTAGCCAAAATGGGAATCGATCCGGTTACCCACAAGCCCAAAAACGACGCCCTGCTCTCCACTCACGACGGTCAGTCCAAGAACGCCGCCAATCTCAGCCACATGGCTCAGTGGGAAAGCGCCAGGCTTGAAGCCGAAGCCCGGCTCGTTAGGGAATCAAAGCTCCGGTCGCACAACTCCCTCATCAATCAGCTGACCTCAGCAGCTGCTGCCGCTGCGGCGGCTGCTGCTTCAACTTCATCCTCATCAGCTCATCAGTTGCTTTTCATGAAGGGTCAAAGTCTTGAGTCTCCAACATCTACACTCACCACTTACAACTCTGAGAATGTGGTACCTGGGATTATGCCGTCGTCTATGATTGAGTTTGTGGGTTGTTCCGGTGCTTCTTCCGGTGATCATCAAGATCAGACGGCTGCAATTAACGCCAAAGAAGAAGGGGACGTACAAGTACAAGATTGGAAACTAGGGTTTGGGAACATGCCGTCATCATCAACCCACTTTGGCCTTCATGATAATGTCACATGGACAAGTACTGATGAACAAGTTCATCATGATCGGGGAATTGGCAGCGTTGATGAGGTGGCGGATCAAGAAGGGTTTACCAATCTCTTGCTTAATAACTCCGTTGATCGTGATCAGAGTATGTCGGATGGAGGCGGTGGTGATTCAGAAAACGGTGGTAGTGCCGGGAGTGACTATTATGAAGATAACAAGAATTACTGGAACAGTATTCTGAATTTGGTGAATTCTTCTCCCTCTCATGATGATTCTCCAATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

375

Amino Acids

41.07

Weight (kDa)

6.05

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 160
AciI CCGC 6 cut(s) 432, 558, 563, 566, 929, 1002
AclWI GGATC 2 cut(s) 359, 939
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 3 cut(s) 206, 1081, 1090
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 4 cut(s) 678, 789, 795, 877
AfeI AGCGCT 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 3 cut(s) 239, 476, 579
AhdI GACNNNNNGTC 1 cut(s) 418
AjnI CCWGG 2 cut(s) 467, 679
AluBI AGCT 7 cut(s) 73, 131, 156, 508, 538, 551, 596
AluI AGCT 7 cut(s) 73, 131, 156, 508, 538, 551, 596
Alw26I GTCTC 2 cut(s) 178, 639
AlwI GGATC 2 cut(s) 359, 939
AlwNI CAGNNNCTG 2 cut(s) 551, 554
Aor51HI AGCGCT 1 cut(s) 344
AoxI GGCC 2 cut(s) 97, 847
ApeKI GCWGC 8 cut(s) 548, 551, 554, 560, 569, 572, 758, 912
ApoI RAATTY 3 cut(s) 206, 1081, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
Asp700I GAANNNNTTC 1 cut(s) 888
Asp718I GGTACC 1 cut(s) 676
AspLEI GCGC 2 cut(s) 345, 467
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 2 cut(s) 487, 1033
AsuHPI GGTGA 5 cut(s) 3, 643, 749, 1019, 1099
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 544
BbvI GCAGC 8 cut(s) 538, 541, 547, 556, 559, 560, 745, 924
BccI CCATC 2 cut(s) 162, 989
BceAI ACGGC 3 cut(s) 676, 771, 811
BciT130I CCWGG 2 cut(s) 469, 681
BclI TGATCA 2 cut(s) 739, 979
BcnI CCSGG 2 cut(s) 487, 1033
BcoDI GTCTC 2 cut(s) 178, 639
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 2 cut(s) 346, 468
BglI GCCNNNNNGGC 1 cut(s) 563
BlpI GCTNAGC 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 4 cut(s) 469, 487, 681, 1033
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 4 cut(s) 469, 487, 681, 1033
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 544
Bpu1102I GCTNAGC 1 cut(s) 346
BpuEI CTTGAG 2 cut(s) 320, 650
BpuMI CCSGG 2 cut(s) 487, 1033
Bsa29I ATCGAT 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 47, 100, 680
BsaWI WCCGGW 4 cut(s) 367, 510, 722, 734
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 2 cut(s) 326, 1070
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 2 cut(s) 469, 681
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 47, 100, 680
BseGI GGATG 2 cut(s) 584, 1000
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 6 cut(s) 155, 173, 454, 467, 558, 657
BseNI ACTGG 2 cut(s) 326, 1070
BseXI GCAGC 8 cut(s) 538, 541, 547, 556, 559, 560, 745, 924
BseYI CCCAGC 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 2 cut(s) 99, 849
BshNI GGYRCC 1 cut(s) 676
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 515
BsiSI CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 2 cut(s) 178, 639
BsmFI GGGAC 1 cut(s) 797
BsnI GGCC 2 cut(s) 99, 849
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
Bsp1720I GCTNAGC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 6 cut(s) 432, 558, 563, 566, 929, 1002
BspANI GGCC 2 cut(s) 99, 849
BspCNI CTCAG 6 cut(s) 156, 174, 453, 466, 557, 658
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 4 cut(s) 612, 853, 895, 1105
BspLI GGNNCC 1 cut(s) 678
BspPI GGATC 2 cut(s) 359, 939
BspT107I GGYRCC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 2 cut(s) 326, 1070
BssECI CCNNGG 3 cut(s) 47, 100, 680
BssMI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 2 cut(s) 469, 681
Bst4CI ACNGT 4 cut(s) 15, 416, 1022, 1073
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 554
BstDEI CTNAG 8 cut(s) 164, 182, 253, 346, 440, 453, 544, 666
BstDSI CCRYGG 2 cut(s) 47, 100
BstEII GGTNACC 2 cut(s) 9, 370
BstF5I GGATG 2 cut(s) 584, 1000
BstH2I RGCGCY 2 cut(s) 346, 468
BstHHI GCGC 2 cut(s) 345, 467
BstKTI GATC 7 cut(s) 367, 742, 751, 901, 934, 976, 982
BstMAI GTCTC 2 cut(s) 178, 639
BstMBI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 9 cut(s) 514, 554, 557, 560, 563, 566, 569, 572, 767
BstNI CCWGG 2 cut(s) 469, 681
BstNSI RCATGY 1 cut(s) 826
BstPI GGTNACC 2 cut(s) 9, 370
BstSCI CCNGG 4 cut(s) 467, 485, 679, 1031
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 8 cut(s) 538, 541, 547, 556, 559, 560, 745, 924
BstV2I GAAGAC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 2 cut(s) 99, 849
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 2 cut(s) 47, 100
BtsCI GGATG 2 cut(s) 584, 1000
BtsIMutI CAGTG 1 cut(s) 461
CaiI CAGNNNCTG 2 cut(s) 551, 554
CciI TCATGA 4 cut(s) 612, 853, 895, 1105
CfoI GCGC 2 cut(s) 345, 467
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 401
Csp6I GTAC 4 cut(s) 677, 788, 794, 876
CviQI GTAC 4 cut(s) 677, 788, 794, 876
DdeI CTNAG 8 cut(s) 164, 182, 253, 346, 440, 453, 544, 666
DpnI GATC 7 cut(s) 366, 741, 750, 900, 933, 975, 981
DpnII GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
DriI GACNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 287
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 944
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 44
Eco47III AGCGCT 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 122
Eco91I GGTNACC 2 cut(s) 9, 370
EcoO65I GGTNACC 2 cut(s) 9, 370
EcoRI GAATTC 1 cut(s) 1090
EcoRII CCWGG 2 cut(s) 467, 679
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 100
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 329, 361
FaqI GGGAC 1 cut(s) 797
FbaI TGATCA 2 cut(s) 739, 979
FblI GTMKAC 1 cut(s) 160
FokI GGATG 2 cut(s) 571, 1007
FriOI GRGCYC 1 cut(s) 118
FspBI CTAG 1 cut(s) 809
GlaI GCGC 2 cut(s) 344, 466
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 2 cut(s) 346, 468
HaeIII GGCC 2 cut(s) 99, 849
HapII CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 345, 467
Hin1I GRCGYC 1 cut(s) 393
Hin6I GCGC 2 cut(s) 343, 465
HinP1I GCGC 2 cut(s) 343, 465
HinfI GANTC 6 cut(s) 52, 360, 500, 632, 1010, 1112
HpaII CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
HphI GGTGA 5 cut(s) 3, 643, 749, 1019, 1099
Hpy166II GTNNAC 3 cut(s) 51, 161, 945
Hpy188I TCNGA 8 cut(s) 141, 183, 667, 753, 984, 994, 1015, 1080
Hpy8I GTNNAC 3 cut(s) 51, 161, 945
Hpy99I CGWCG 3 cut(s) 395, 416, 697
HpyAV CCTTC 4 cut(s) 610, 773, 860, 932
HpyCH4III ACNGT 4 cut(s) 15, 416, 1022, 1073
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 2 cut(s) 217, 761
HpyF10VI GCNNNNNNNGC 9 cut(s) 514, 554, 557, 560, 563, 566, 569, 572, 767
HpyF3I CTNAG 8 cut(s) 164, 182, 253, 346, 440, 453, 544, 666
HpySE526I ACGT 1 cut(s) 786
Hsp92I GRCGYC 1 cut(s) 393
HspAI GCGC 2 cut(s) 343, 465
KpnI GGTACC 1 cut(s) 680
Ksp22I TGATCA 2 cut(s) 739, 979
Kzo9I GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
LmnI GCTCC 1 cut(s) 513
Lsp1109I GCAGC 8 cut(s) 538, 541, 547, 556, 559, 560, 745, 924
MaeI CTAG 1 cut(s) 809
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 5 cut(s) 9, 20, 370, 862, 1037
MalI GATC 7 cut(s) 366, 741, 750, 900, 933, 975, 981
MboI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 175, 206, 762, 906, 1060, 1081, 1090
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 2 cut(s) 46, 641
MmeI TCCRAC 3 cut(s) 89, 662, 972
MnlI CCTC 9 cut(s) 128, 192, 260, 536, 553, 598, 916, 992, 1111
Mox20I TGGCCA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 35, 765, 960
MslI CAYNNNNRTG 2 cut(s) 99, 858
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 3 cut(s) 538, 551, 560
MspI CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
MspR9I CCNGG 4 cut(s) 469, 487, 681, 1033
MvaI CCWGG 2 cut(s) 469, 681
MwoI GCNNNNNNNGC 9 cut(s) 514, 554, 557, 560, 563, 566, 569, 572, 767
NciI CCSGG 2 cut(s) 487, 1033
NcoI CCATGG 1 cut(s) 100
NdeII GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
NlaIV GGNNCC 1 cut(s) 678
NmuCI GTSAC 4 cut(s) 9, 20, 862, 1037
NspI RCATGY 1 cut(s) 826
PagI TCATGA 4 cut(s) 612, 853, 895, 1105
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 4 cut(s) 360, 500, 1010, 1112
PflFI GACNNNGTC 1 cut(s) 26
PleI GAGTC 2 cut(s) 46, 640
PpsI GAGTC 2 cut(s) 46, 640
Psp6I CCWGG 2 cut(s) 467, 679
PspEI GGTNACC 2 cut(s) 9, 370
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 467, 679
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 1 cut(s) 44
PstNI CAGNNNCTG 2 cut(s) 551, 554
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 538, 551
RsaI GTAC 4 cut(s) 678, 789, 795, 877
RsaNI GTAC 4 cut(s) 677, 788, 794, 876
RseI CAYNNNNRTG 2 cut(s) 99, 858
SaqAI TTAA 3 cut(s) 35, 765, 960
Sau3AI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 2 cut(s) 46, 641
ScrFI CCNGG 4 cut(s) 469, 487, 681, 1033
SduI GDGCHC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 99, 858
SmlI CTYRAG 2 cut(s) 335, 629
SmoI CTYRAG 2 cut(s) 335, 629
Sse9I AATT 7 cut(s) 175, 206, 762, 906, 1060, 1081, 1090
SsiI CCGC 6 cut(s) 432, 558, 563, 566, 929, 1002
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 4 cut(s) 467, 485, 679, 1031
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 4 cut(s) 15, 416, 1022, 1073
TaiI ACGT 1 cut(s) 789
TaqI TCGA 2 cut(s) 87, 363
TasI AATT 7 cut(s) 175, 206, 762, 906, 1060, 1081, 1090
TatI WGTACW 2 cut(s) 793, 875
TauI GCSGC 4 cut(s) 434, 560, 566, 569
TfiI GAWTC 4 cut(s) 360, 500, 1010, 1112
Tru1I TTAA 3 cut(s) 35, 765, 960
Tru9I TTAA 3 cut(s) 35, 765, 960
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 4 cut(s) 9, 20, 862, 1037
TseI GCWGC 8 cut(s) 548, 551, 554, 560, 569, 572, 758, 912
Tsp45I GTSAC 4 cut(s) 9, 20, 862, 1037
TspDTI ATGAA 7 cut(s) 573, 601, 629, 842, 881, 897, 1062
TspGWI ACGGA 2 cut(s) 36, 958
TspRI CASTG 1 cut(s) 461
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 206, 1081, 1090
XceI RCATGY 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 1 cut(s) 809
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.