AT3G27210

At3g27210-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008381
Physical Location & Seq
Reverse (-)
10045174 .. 10047453
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27210.1

Sequence Viewer

Length: 705 bp
ATGGGTTCGTCTTCGTCGTCGTCGCTTAATAACTCTCCGATTAGAGCTGATAGTATGGTAACTCCAGAATCTCAGATGACTGTGAACGATAACAAAAACGACAACGTTTCGATCTTGTCTCCTTCTGTCAAGAAAAGCTTTGAATCGCCAAGGAAGAGTACTTCGATTCCGGCGAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTCTCTTCATCCAAGAAAAGTTTCGGAAGCAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGACTCCGACGATGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAGCTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAAGAAGCCTTCCCGAGGCTCGTCTTCTCCAGCGCCACTTCCAAGGAGGAAGAAGCTTGGTGAGCTTTTCAGAGACAGTATAAGAGAAGAACGAGAAGAAAGCGGTTCATCGTCAGCTATAAGCACTCCTTATCTATCAGGTGCTAACTCACGCGAATTCAATGACACCGCCATCGAAAAGGAAGAGAAGAAGAAGTCTAACTGGCATCATCATCGTTGTCTTCCTGGTTTCTCTTCATGTGGTGGAAGTTTCATGGAGAGGAGGAAGAAGATGAGTTCTGAAACTCCAGTTGTTGCTGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.0

Weight (kDa)

9.44

Isoelectric Point (pI)

71.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 552
AciI CCGC 2 cut(s) 501, 567
AclI AACGTT 1 cut(s) 105
AcsI RAATTY 1 cut(s) 554
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 332, 413
AgsI TTSAA 2 cut(s) 143, 559
AjnI CCWGG 1 cut(s) 622
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 6 cut(s) 47, 138, 354, 454, 463, 515
AluI AGCT 6 cut(s) 47, 138, 354, 454, 463, 515
Alw26I GTCTC 2 cut(s) 123, 465
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 265, 351
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 433
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 411
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 3 cut(s) 3, 414, 611
BbvI GCAGC 2 cut(s) 277, 363
BccI CCATC 2 cut(s) 334, 578
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 1 cut(s) 624
BcoDI GTCTC 2 cut(s) 123, 465
BfoI RGCGCY 1 cut(s) 434
BisI GCNGC 2 cut(s) 266, 352
BlsI GCNGC 2 cut(s) 267, 353
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 3 cut(s) 3, 414, 611
BpmI CTGGAG 3 cut(s) 48, 411, 669
BsaJI CCNNGG 4 cut(s) 149, 269, 412, 440
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 413
Bse1I ACTGG 2 cut(s) 605, 686
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 149, 269, 412, 440
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 332, 413
BseMII CTCAG 2 cut(s) 86, 372
BseNI ACTGG 2 cut(s) 605, 686
BseRI GAGGAG 1 cut(s) 673
BseXI GCAGC 2 cut(s) 277, 363
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 170, 191
BslI CCNNNNNNNGG 2 cut(s) 332, 413
BsmAI GTCTC 2 cut(s) 123, 465
BsnI GGCC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 411
Bsp143I GATC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 269
BspACI CCGC 2 cut(s) 501, 567
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 85, 371
BspFNI CGCG 1 cut(s) 552
BsrI ACTGG 2 cut(s) 605, 686
BssECI CCNNGG 4 cut(s) 149, 269, 412, 440
BssMI GATC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 3 cut(s) 149, 269, 440
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 2 cut(s) 82, 476
Bst6I CTCTTC 4 cut(s) 149, 220, 576, 637
BstDEI CTNAG 3 cut(s) 72, 345, 358
BstDSI CCRYGG 1 cut(s) 269
BstENI CCTNNNNNAGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 123, 465
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 271, 312, 460
BstNI CCWGG 1 cut(s) 624
BstSCI CCNGG 1 cut(s) 622
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 277, 363
BstV2I GAAGAC 3 cut(s) 3, 414, 611
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 218
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 270, 636, 652
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 3 cut(s) 72, 345, 358
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 4 cut(s) 149, 220, 576, 637
EarI CTCTTC 4 cut(s) 149, 220, 576, 637
Eco130I CCWWGG 3 cut(s) 149, 269, 440
Eco88I CYCGRG 1 cut(s) 411
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 3 cut(s) 149, 269, 440
ErhI CCWWGG 3 cut(s) 149, 269, 440
FaeI CATG 3 cut(s) 273, 639, 655
FaiI YATR 7 cut(s) 56, 271, 389, 479, 518, 637, 653
FalI AAGNNNNNCTT 6 cut(s) 122, 154, 338, 370, 511, 543
FatI CATG 3 cut(s) 269, 635, 651
Fnu4HI GCNGC 2 cut(s) 266, 352
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 266, 352
GlaI GCGC 1 cut(s) 432
GluI GCNGC 2 cut(s) 266, 352
GsuI CTGGAG 3 cut(s) 48, 411, 669
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 170, 191
HhaI GCGC 1 cut(s) 433
Hin1II CATG 3 cut(s) 273, 639, 655
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 2 cut(s) 136, 452
HinfI GANTC 5 cut(s) 68, 143, 166, 260, 284
HpaII CCGG 2 cut(s) 170, 191
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 9 cut(s) 39, 75, 236, 283, 289, 335, 361, 470, 679
Hpy188III TCNNGA 3 cut(s) 65, 130, 411
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 4 cut(s) 19, 22, 25, 293
HpyAV CCTTC 2 cut(s) 132, 417
HpyCH4III ACNGT 2 cut(s) 82, 476
HpyCH4IV ACGT 2 cut(s) 105, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 271, 312, 460
HpyF3I CTNAG 3 cut(s) 72, 345, 358
HpySE526I ACGT 2 cut(s) 105, 373
Hsp92II CATG 3 cut(s) 273, 639, 655
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 9 cut(s) 78, 183, 204, 441, 522, 586, 609, 636, 699
Lsp1109I GCAGC 2 cut(s) 277, 363
LweI GCATC 1 cut(s) 613
MaeII ACGT 2 cut(s) 105, 373
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MluCI AATT 1 cut(s) 554
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 4 cut(s) 407, 438, 651, 654
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 27
MspI CCGG 2 cut(s) 170, 191
MspR9I CCNGG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 271, 312, 460
NcoI CCATGG 1 cut(s) 269
NdeII GATC 1 cut(s) 111
NlaIII CATG 3 cut(s) 273, 639, 655
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 170
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 4 cut(s) 68, 143, 166, 260
PkrI GCNGC 2 cut(s) 267, 353
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp1406I AACGTT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 266, 352
Sau3AI GATC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 624
SfaNI GCATC 1 cut(s) 613
Sse9I AATT 1 cut(s) 554
SsiI CCGC 2 cut(s) 501, 567
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 3 cut(s) 149, 269, 440
TaaI ACNGT 2 cut(s) 82, 476
TaiI ACGT 2 cut(s) 108, 376
TaqI TCGA 4 cut(s) 110, 164, 258, 573
TasI AATT 1 cut(s) 554
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 4 cut(s) 68, 143, 166, 260
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 2 cut(s) 265, 351
TspDTI ATGAA 5 cut(s) 207, 261, 495, 624, 640
XagI CCTNNNNNAGG 1 cut(s) 411
XapI RAATTY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.