Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Reverse (-)

826144 .. 829564

Gene Structure 3421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1013200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTCATGTGTTTCGGTTCATAAGGACGCAGATTCCGTCATGAAGCTCCGACTTTCAATCGGGTCCAAAACCGATAATAAGCTCGTCATCCCACCATTCCCAGTCAAGGATGATAAACTCACCGCCAATATTGACCGTCAGATCGCCGATCTTCCTCTTAAATCTCAATGGTCGCCCCCTCTCTCAGCCACCGCCACCACCTTCCGGGACTACGGTAGTAAAGAGGATACCTTTTTTGATACCCGGCCGTGGTTGGACTCGGACTGTGAAGATGATTTTTACAGTGTGAATGGCGATTTTACTCCATCTCGCGGCAACACTCCCGTCCATCACAACTTACCCGCTGGTTCCCCTCTAATCAACAAAACTCCTTTCGAGAACAGAACTCCTGTTTCCATTCCTGTCCCATCTCCAACACCAACAGAAAAGAAGAAGAAATTACTTGAACTTTTTCAGGAGAGCTCCAAAGATGATGAATACGCGAACAATGAAGTAAAGCCACCAACTGCACATAACCTCCCTCCAAAGTATGTCAATGGAACTAATTCCGTGGGTAGTAGCGAGAGGACAATAAATGGAGACGTTCAAACTGAGATTGAGATGGAGAAACCATTTAGGACCTCGCCGTGCTGCCTTCCAAGCTTAGTTTCTTGCCGCAGCTCGAGTCACAGGAAGAAGATGAGCCCTACCATTCCTGTAGGTGATAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.27

Weight (kDa)

6.52

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	315, 485
AciI	CCGC	5 cut(s)	126, 195, 315, 345, 658
AcoI	YGGCCR	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	109, 207, 252, 314
AgsI	TTSAA	3 cut(s)	60, 449, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	6 cut(s)	49, 85, 465, 645, 663, 713
AluI	AGCT	6 cut(s)	49, 85, 465, 645, 663, 713
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	664
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	633, 660
Asp700I	GAANNNNTTC	2 cut(s)	453, 547
AspS9I	GGNCC	2 cut(s)	66, 621
AsuC2I	CCSGG	2 cut(s)	209, 247
AsuHPI	GGTGA	2 cut(s)	115, 716
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	2 cut(s)	66, 621
BanII	GRGCYC	2 cut(s)	467, 689
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	620, 672
BccI	CCATC	4 cut(s)	316, 339, 418, 598
BceAI	ACGGC	2 cut(s)	235, 613
BciVI	GTATCC	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	209, 247
BcoDI	GTCTC	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	699
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	316, 634, 658, 661
BlsI	GCNGC	4 cut(s)	317, 635, 659, 662
Bme1390I	CCNGG	2 cut(s)	209, 247
Bme18I	GGWCC	2 cut(s)	66, 621
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	66, 621
BmiI	GGNNCC	2 cut(s)	67, 352
BmrFI	CCNGG	2 cut(s)	209, 247
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	209, 247
BsaJI	CCNNGG	2 cut(s)	251, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 207, 252, 314
Bse1I	ACTGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	251, 552
BseGI	GGATG	2 cut(s)	90, 118
BseLI	CCNNNNNNNGG	4 cut(s)	109, 207, 252, 314
BseMII	CTCAG	2 cut(s)	201, 585
BseNI	ACTGG	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	620, 672
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	2 cut(s)	315, 485
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	208, 247
BslFI	GGGAC	2 cut(s)	224, 392
BslI	CCNNNNNNNGG	4 cut(s)	109, 207, 252, 314
BsmAI	GTCTC	1 cut(s)	576
BsmBI	CGTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	224, 392
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	467, 689
Bsp143I	GATC	2 cut(s)	144, 151
BspACI	CCGC	5 cut(s)	126, 195, 315, 345, 658
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	200, 586
BspFNI	CGCG	2 cut(s)	315, 485
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	67, 352
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	251, 552
BssMI	GATC	2 cut(s)	144, 151
Bst4CI	ACNGT	4 cut(s)	140, 218, 269, 287
BstDEI	CTNAG	3 cut(s)	187, 594, 646
BstDSI	CCRYGG	2 cut(s)	251, 552
BstF5I	GGATG	2 cut(s)	90, 118
BstFNI	CGCG	2 cut(s)	315, 485
BstKTI	GATC	2 cut(s)	147, 154
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	2 cut(s)	144, 151
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	207, 245
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	2 cut(s)	315, 485
BstV1I	GCAGC	2 cut(s)	620, 672
BstZI	CGGCCG	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	2 cut(s)	251, 552
BtsCI	GGATG	2 cut(s)	90, 118
BtsIMutI	CAGTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	66, 621
CseI	GACGC	1 cut(s)	38
CviAII	CATG	2 cut(s)	9, 43
DdeI	CTNAG	3 cut(s)	187, 594, 646
DpnI	GATC	2 cut(s)	146, 153
DpnII	GATC	2 cut(s)	144, 151
EaeI	YGGCCR	1 cut(s)	248
EagI	CGGCCG	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	465
EclXI	CGGCCG	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	467, 689
Eco47I	GGWCC	2 cut(s)	66, 621
Eco52I	CGGCCG	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	621
EcoT38I	GRGCYC	2 cut(s)	467, 689
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	2 cut(s)	12, 46
FaiI	YATR	5 cut(s)	10, 24, 44, 516, 534
FaqI	GGGAC	2 cut(s)	224, 392
FatI	CATG	2 cut(s)	8, 42
FauI	CCCGC	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	316, 634, 658, 661
FokI	GGATG	2 cut(s)	77, 125
FriOI	GRGCYC	2 cut(s)	467, 689
Fsp4HI	GCNGC	4 cut(s)	316, 634, 658, 661
GluI	GCNGC	4 cut(s)	316, 634, 658, 661
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	208, 247
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	12, 46
HindIII	AAGCTT	2 cut(s)	643, 711
HinfI	GANTC	3 cut(s)	35, 260, 667
HpaII	CCGG	2 cut(s)	208, 247
HphI	GGTGA	2 cut(s)	115, 716
Hpy188I	TCNGA	3 cut(s)	53, 144, 265
Hpy188III	TCNNGA	3 cut(s)	43, 379, 458
HpyAV	CCTTC	2 cut(s)	214, 647
HpyCH4III	ACNGT	4 cut(s)	140, 218, 269, 287
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	642
HpyF3I	CTNAG	3 cut(s)	187, 594, 646
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	2 cut(s)	12, 46
Kzo9I	GATC	2 cut(s)	144, 151
LmnI	GCTCC	2 cut(s)	54, 470
LpnPI	CCDG	9 cut(s)	117, 221, 260, 333, 405, 417, 443, 658, 711
Lsp1109I	GCAGC	2 cut(s)	620, 672
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	2 cut(s)	146, 153
MboI	GATC	2 cut(s)	144, 151
MboII	GAAGA	6 cut(s)	146, 284, 445, 448, 688, 691
MhlI	GDGCHC	2 cut(s)	467, 689
MluCI	AATT	2 cut(s)	440, 547
MlyI	GAGTC	2 cut(s)	254, 676
MmeI	TCCRAC	3 cut(s)	76, 237, 440
MnlI	CCTC	8 cut(s)	168, 192, 220, 366, 530, 534, 561, 634
MroXI	GAANNNNTTC	2 cut(s)	453, 547
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	2 cut(s)	208, 247
MspR9I	CCNGG	2 cut(s)	209, 247
MvnI	CGCG	2 cut(s)	315, 485
MwoI	GCNNNNNNNGC	1 cut(s)	642
NciI	CCSGG	2 cut(s)	209, 247
NdeII	GATC	2 cut(s)	144, 151
NlaIII	CATG	2 cut(s)	12, 46
NlaIV	GGNNCC	2 cut(s)	67, 352
NmuCI	GTSAC	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	664
PagI	TCATGA	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	453, 547
PfeI	GAWTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	317, 635, 659, 662
PleI	GAGTC	2 cut(s)	254, 675
PpsI	GAGTC	2 cut(s)	254, 675
PpuMI	RGGWCCY	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	2 cut(s)	67, 352
PspPI	GGNCC	2 cut(s)	66, 621
PspPPI	RGGWCCY	1 cut(s)	621
PspXI	VCTCGAGB	1 cut(s)	664
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	316, 634, 658, 661
Sau3AI	GATC	2 cut(s)	144, 151
Sau96I	GGNCC	2 cut(s)	66, 621
SchI	GAGTC	2 cut(s)	254, 676
ScrFI	CCNGG	2 cut(s)	209, 247
SduI	GDGCHC	2 cut(s)	467, 689
SfcI	CTRYAG	1 cut(s)	699
Sfr274I	CTCGAG	1 cut(s)	664
SinI	GGWCC	2 cut(s)	66, 621
SlaI	CTCGAG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	2 cut(s)	440, 547
SsiI	CCGC	5 cut(s)	126, 195, 315, 345, 658
SspI	AATATT	1 cut(s)	133
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	207, 245
TaaI	ACNGT	4 cut(s)	140, 218, 269, 287
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	378, 665
TasI	AATT	2 cut(s)	440, 547
TauI	GCSGC	2 cut(s)	318, 660
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	2 cut(s)	633, 660
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	4 cut(s)	11, 59, 492, 507
TspGWI	ACGGA	2 cut(s)	28, 541
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	66, 621
XhoI	CTCGAG	1 cut(s)	664
XmnI	GAANNNNTTC	2 cut(s)	453, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.