Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Reverse (-)

710473 .. 713353

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGTTCATGTGTTTCGGTTCATAAGGACGCAGATTCCGTCATGAAGCTCCGGCTTTCAATCGGGTCCAAAACTGATAATAAGCTCGTCATCCCACCATTCCCAGCCGAGGATGATAAACTCACCGCCAATATTGACCGTCAGATCGCCGATCTTCCTCTTAAATCTCAATGGTCGTCCTCTCTCTGTGCCGCCGCCGCCGCCACCACCACCACCTTCCGGGACTACGGTAGTAAAGAGGATTCCTTTTTTGATACCCGGCCGTGGTTGGACTCGGACTGTGAAGATGATTTTTACAGTGTGAATGGCGATTTTACTCCATCTCGCGGCAACACTCCCGTCCATCACAACTTACCCGCTGGTTCCTCTCCAATCAACAAAACTCCTTTTGAGAACAGAACTCCTGTTTCCATTCCTGTTCCATCTCCAACACCAACAGAAAAGAAGAAGAAATTACTTGAACTTTTTCAGGAGAGCTTCAAAGATGATGAATACGCGAACAATGAAGTAAAGCCGCCAACTGCACTTAACCTCCCTCCAAAGTCTGTCAATGGAACTAATTCCGTGTGTAGTAGTGAGAGGACAACAAATGGAGACGTTCAAACTGAGATTGAGATGGGGAAACCATTTAGGGCCTTGCCGTGCTGCCTTCCAAGCTTAGTTTCTTGCCGCAGCTCGAGTCACAGGAAGAAGATGAGCCCTACCATTCCTGTAGGTGATAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.44

Weight (kDa)

6.11

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	327, 497
AciI	CCGC	9 cut(s)	126, 192, 195, 198, 201, 327, 357, 515, 670
AcoI	YGGCCR	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	109, 219, 264, 326
AgsI	TTSAA	4 cut(s)	60, 461, 481, 602
AjuI	GAANNNNNNNTTGG	2 cut(s)	646, 678
AluBI	AGCT	6 cut(s)	49, 85, 477, 657, 675, 725
AluI	AGCT	6 cut(s)	49, 85, 477, 657, 675, 725
Alw26I	GTCTC	1 cut(s)	588
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	2 cut(s)	260, 633
ApeKI	GCWGC	2 cut(s)	645, 672
Asp700I	GAANNNNTTC	2 cut(s)	465, 559
AspS9I	GGNCC	2 cut(s)	66, 633
AsuC2I	CCSGG	2 cut(s)	221, 259
AsuHPI	GGTGA	2 cut(s)	115, 728
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	632, 684
BccI	CCATC	4 cut(s)	328, 351, 430, 610
BceAI	ACGGC	2 cut(s)	247, 625
BcnI	CCSGG	2 cut(s)	221, 259
BcoDI	GTCTC	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	711
BisI	GCNGC	9 cut(s)	192, 195, 198, 201, 328, 515, 646, 670, 673
BlsI	GCNGC	9 cut(s)	193, 196, 199, 202, 329, 516, 647, 671, 674
Bme1390I	CCNGG	2 cut(s)	221, 259
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	66, 633
BmiI	GGNNCC	2 cut(s)	67, 364
BmrFI	CCNGG	2 cut(s)	221, 259
BpuMI	CCSGG	2 cut(s)	221, 259
BsaJI	CCNNGG	2 cut(s)	108, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 219, 264, 326
BseDI	CCNNGG	2 cut(s)	108, 263
BseGI	GGATG	2 cut(s)	90, 118
BseLI	CCNNNNNNNGG	4 cut(s)	109, 219, 264, 326
BseMII	CTCAG	1 cut(s)	597
BseX3I	CGGCCG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	632, 684
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	327, 497
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	262, 635
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	3 cut(s)	52, 220, 259
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	4 cut(s)	109, 219, 264, 326
BsmAI	GTCTC	1 cut(s)	588
BsmBI	CGTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	262, 635
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	2 cut(s)	144, 151
BspACI	CCGC	9 cut(s)	126, 192, 195, 198, 201, 327, 357, 515, 670
BspANI	GGCC	2 cut(s)	262, 635
BspCNI	CTCAG	1 cut(s)	598
BspFNI	CGCG	2 cut(s)	327, 497
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	67, 364
BssECI	CCNNGG	2 cut(s)	108, 263
BssMI	GATC	2 cut(s)	144, 151
Bst4CI	ACNGT	4 cut(s)	140, 230, 281, 299
BstDEI	CTNAG	2 cut(s)	606, 658
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	90, 118
BstFNI	CGCG	2 cut(s)	327, 497
BstKTI	GATC	2 cut(s)	147, 154
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	2 cut(s)	144, 151
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 200, 654
BstSCI	CCNGG	2 cut(s)	219, 257
BstSFI	CTRYAG	1 cut(s)	711
BstUI	CGCG	2 cut(s)	327, 497
BstV1I	GCAGC	2 cut(s)	632, 684
BstZI	CGGCCG	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	262, 635
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	90, 118
BtsIMutI	CAGTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	66, 633
CseI	GACGC	1 cut(s)	38
CviAII	CATG	2 cut(s)	9, 43
DdeI	CTNAG	2 cut(s)	606, 658
DpnI	GATC	2 cut(s)	146, 153
DpnII	GATC	2 cut(s)	144, 151
EaeI	YGGCCR	1 cut(s)	260
EagI	CGGCCG	1 cut(s)	260
EclXI	CGGCCG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	701
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	2 cut(s)	12, 46
FaiI	YATR	3 cut(s)	10, 24, 44
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	8, 42
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	9 cut(s)	192, 195, 198, 201, 328, 515, 646, 670, 673
FokI	GGATG	2 cut(s)	77, 125
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	9 cut(s)	192, 195, 198, 201, 328, 515, 646, 670, 673
GluI	GCNGC	9 cut(s)	192, 195, 198, 201, 328, 515, 646, 670, 673
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	262, 635
HapII	CCGG	3 cut(s)	52, 220, 259
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	12, 46
HindIII	AAGCTT	2 cut(s)	655, 723
HinfI	GANTC	4 cut(s)	35, 242, 272, 679
HpaII	CCGG	3 cut(s)	52, 220, 259
HphI	GGTGA	2 cut(s)	115, 728
Hpy188I	TCNGA	2 cut(s)	144, 277
Hpy188III	TCNNGA	2 cut(s)	43, 470
HpyAV	CCTTC	2 cut(s)	226, 659
HpyCH4III	ACNGT	4 cut(s)	140, 230, 281, 299
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 200, 654
HpyF3I	CTNAG	2 cut(s)	606, 658
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	2 cut(s)	12, 46
Kzo9I	GATC	2 cut(s)	144, 151
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	2 cut(s)	632, 684
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	2 cut(s)	146, 153
MboI	GATC	2 cut(s)	144, 151
MboII	GAAGA	6 cut(s)	146, 296, 457, 460, 700, 703
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	2 cut(s)	452, 559
MlyI	GAGTC	2 cut(s)	266, 688
MmeI	TCCRAC	2 cut(s)	249, 452
MnlI	CCTC	8 cut(s)	103, 168, 190, 232, 376, 542, 546, 573
MroXI	GAANNNNTTC	2 cut(s)	465, 559
MseI	TTAA	2 cut(s)	162, 528
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	3 cut(s)	52, 220, 259
MspR9I	CCNGG	2 cut(s)	221, 259
MvnI	CGCG	2 cut(s)	327, 497
MwoI	GCNNNNNNNGC	3 cut(s)	197, 200, 654
NciI	CCSGG	2 cut(s)	221, 259
NdeII	GATC	2 cut(s)	144, 151
NlaIII	CATG	2 cut(s)	12, 46
NlaIV	GGNNCC	2 cut(s)	67, 364
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	676
PagI	TCATGA	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	465, 559
PfeI	GAWTC	2 cut(s)	35, 242
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	9 cut(s)	193, 196, 199, 202, 329, 516, 647, 671, 674
PleI	GAGTC	2 cut(s)	266, 687
PpsI	GAGTC	2 cut(s)	266, 687
PspFI	CCCAGC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	67, 364
PspPI	GGNCC	2 cut(s)	66, 633
PspXI	VCTCGAGB	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	162, 528
SatI	GCNGC	9 cut(s)	192, 195, 198, 201, 328, 515, 646, 670, 673
Sau3AI	GATC	2 cut(s)	144, 151
Sau96I	GGNCC	2 cut(s)	66, 633
SchI	GAGTC	2 cut(s)	266, 688
ScrFI	CCNGG	2 cut(s)	221, 259
SduI	GDGCHC	1 cut(s)	701
SfcI	CTRYAG	1 cut(s)	711
Sfr274I	CTCGAG	1 cut(s)	676
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	2 cut(s)	452, 559
SsiI	CCGC	9 cut(s)	126, 192, 195, 198, 201, 327, 357, 515, 670
SspI	AATATT	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	219, 257
TaaI	ACNGT	4 cut(s)	140, 230, 281, 299
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	1 cut(s)	677
TasI	AATT	2 cut(s)	452, 559
TauI	GCSGC	7 cut(s)	194, 197, 200, 203, 330, 517, 672
TfiI	GAWTC	2 cut(s)	35, 242
Tru1I	TTAA	2 cut(s)	162, 528
Tru9I	TTAA	2 cut(s)	162, 528
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	2 cut(s)	645, 672
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	4 cut(s)	11, 59, 504, 519
TspGWI	ACGGA	2 cut(s)	28, 553
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	66
XhoI	CTCGAG	1 cut(s)	676
XmnI	GAANNNNTTC	2 cut(s)	465, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.