Rorug02G0581800

At3g27210-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008381
Physical Location & Seq
Reverse (-)
70565108 .. 70567736
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0581800.1

Sequence Viewer

Length: 822 bp
ATGAGACCTCCAAGAGGCCGTGGTGGTGTTGTTCGCGGCGAAGCCGATAGGGGTCATGGAAGATACATCAAAGGTCCTCCTCGGAATGAGATAGGTACTAGAGGTCGTCCTCCTCGGTATGAGGTCGGGCCTAGAAGTCGTCCTCCTCCTCGGTATGATGTGGAGACTAGGGGTCCTCGTCCACCTCGGTATGATGTTGGGACTAGGGTTCCTCGTCCTCCTCGAAAGCAGGTTGGGATTAGGGGTCCTCGTCCTCATCGGAATGAGGTACGGGCTAGAGGTCCACGTCCTCGTCGGAATGATAAAGGGATAAGAGGTAGACAAAAAGCTGTGATCATACCACATAGGAATGAAGGTGTGTTTTATGCCAAGACTGGCAAAGAGGATGTTATCCTCACAAAGAACATGGTTCCAGGACAATCTGTTTACAATGAGAAGCGTATTCCCATTCCGAATGAAGACGGAAGCAAAGTTGAATACAGGATTTGGAACCCTCATCGCTCAAAGCTAGCAGCCGCAGTCCTAGGAGGTGTTAACAACATCTGGATTGTACCGGGGGCTAAGGTTCTTTACCTAGGAGCCGCTTCAGGAACCTCAGTCTCTCATGTTTCTGACATTGTTGGACCTACTGGAGTGGTATATGCTGTGGAATTTTCGGCTAGATCTGCTAGAGAATTGGTGACCATGGCACAGAAGAGAACAAATGTTATTCCAATATTTGAAGATGCAAGACACCCTGGCAAGTATCGGATGCTCGTTGGCATGGTCGATGTCATTTTCTCTGATGTTGCTCAGCCGGATCAGGTTTTACTACGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.45

Weight (kDa)

11.13

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fibrillarin PF01269 114 - 269 2.3e-71 Fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 319
AccII CGCG 1 cut(s) 36
AciI CCGC 3 cut(s) 36, 516, 582
AclWI GGATC 1 cut(s) 807
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 3 cut(s) 97, 270, 552
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 476, 722
AhdI GACNNNNNGTC 1 cut(s) 171
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 2 cut(s) 412, 736
AluBI AGCT 2 cut(s) 329, 508
AluI AGCT 2 cut(s) 329, 508
Alw26I GTCTC 2 cut(s) 158, 604
AlwI GGATC 1 cut(s) 807
AoxI GGCC 2 cut(s) 16, 128
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 650
AspA2I CCTAGG 2 cut(s) 523, 574
AspS9I GGNCC 6 cut(s) 74, 128, 173, 245, 281, 623
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 691
AsuNHI GCTAGC 1 cut(s) 508
AvaII GGWCC 5 cut(s) 74, 173, 245, 281, 623
AvrII CCTAGG 2 cut(s) 523, 574
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 524
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 2 cut(s) 414, 738
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 158, 604
BfuAI ACCTGC 1 cut(s) 220
BglII AGATCT 1 cut(s) 662
BisI GCNGC 4 cut(s) 37, 513, 516, 582
BlnI CCTAGG 2 cut(s) 523, 574
BlpI GCTNAGC 1 cut(s) 792
BlsI GCNGC 4 cut(s) 38, 514, 517, 583
Bme1390I CCNGG 3 cut(s) 414, 555, 738
Bme18I GGWCC 5 cut(s) 74, 173, 245, 281, 623
BmeRI GACNNNNNGTC 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 6 cut(s) 74, 128, 173, 245, 281, 623
BmiI GGNNCC 7 cut(s) 174, 210, 246, 411, 491, 580, 592
BmrFI CCNGG 3 cut(s) 414, 555, 738
BmsI GCATC 2 cut(s) 715, 741
BmtI GCTAGC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 792
BpuMI CCSGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 379, 634
BseBI CCWGG 2 cut(s) 414, 738
BseGI GGATG 2 cut(s) 391, 756
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 609, 806
BseNI ACTGG 2 cut(s) 379, 634
BseRI GAGGAG 5 cut(s) 69, 102, 135, 138, 210
BseXI GCAGC 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 18, 130
BsiSI CCGG 2 cut(s) 554, 797
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 158, 604
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 2 cut(s) 18, 130
Bsp143I GATC 3 cut(s) 333, 662, 799
Bsp1720I GCTNAGC 1 cut(s) 792
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 3 cut(s) 36, 516, 582
BspANI GGCC 2 cut(s) 18, 130
BspCNI CTCAG 2 cut(s) 608, 805
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 7 cut(s) 174, 210, 246, 411, 491, 580, 592
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 807
BsrI ACTGG 2 cut(s) 379, 634
BssMI GATC 3 cut(s) 333, 662, 799
BssT1I CCWWGG 3 cut(s) 523, 574, 684
Bst2UI CCWGG 2 cut(s) 414, 738
Bst6I CTCTTC 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 561, 595, 792
BstDSI CCRYGG 2 cut(s) 19, 684
BstEII GGTNACC 1 cut(s) 679
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 391, 756
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 3 cut(s) 336, 665, 802
BstMAI GTCTC 2 cut(s) 158, 604
BstMBI GATC 3 cut(s) 333, 662, 799
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 2 cut(s) 414, 738
BstPI GGTNACC 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 412, 553, 736
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 2 cut(s) 18, 130
BtgI CCRYGG 2 cut(s) 19, 684
BtgZI GCGATG 1 cut(s) 482
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 391, 756
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 510
Cfr13I GGNCC 6 cut(s) 74, 128, 173, 245, 281, 623
Csp6I GTAC 3 cut(s) 96, 269, 551
CviAII CATG 5 cut(s) 56, 406, 605, 685, 763
CviQI GTAC 3 cut(s) 96, 269, 551
DdeI CTNAG 3 cut(s) 561, 595, 792
DpnI GATC 3 cut(s) 335, 664, 801
DpnII GATC 3 cut(s) 333, 662, 799
DriI GACNNNNNGTC 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 689
Eam1105I GACNNNNNGTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 689
Eco130I CCWWGG 3 cut(s) 523, 574, 684
Eco47I GGWCC 5 cut(s) 74, 173, 245, 281, 623
Eco57I CTGAAG 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 679
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoO109I RGGNCCY 3 cut(s) 74, 173, 245
EcoO65I GGTNACC 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 412, 736
EcoT14I CCWWGG 3 cut(s) 523, 574, 684
ErhI CCWWGG 3 cut(s) 523, 574, 684
FaeI CATG 5 cut(s) 59, 409, 608, 688, 766
FaqI GGGAC 1 cut(s) 214
FatI CATG 5 cut(s) 55, 405, 604, 684, 762
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 37, 513, 516, 582
FokI GGATG 2 cut(s) 398, 763
Fsp4HI GCNGC 4 cut(s) 37, 513, 516, 582
GluI GCNGC 4 cut(s) 37, 513, 516, 582
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 18, 130
HapII CCGG 2 cut(s) 554, 797
Hin1II CATG 5 cut(s) 59, 409, 608, 688, 766
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HpaI GTTAAC 1 cut(s) 535
HpaII CCGG 2 cut(s) 554, 797
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 5 cut(s) 182, 284, 320, 427, 535
Hpy188I TCNGA 7 cut(s) 84, 261, 297, 453, 613, 750, 784
Hpy188III TCNNGA 2 cut(s) 544, 588
Hpy8I GTNNAC 5 cut(s) 182, 284, 320, 427, 535
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 3 cut(s) 561, 595, 792
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 5 cut(s) 59, 409, 608, 688, 766
Ksp22I TGATCA 1 cut(s) 333
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 333, 662, 799
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 2 cut(s) 715, 741
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 679
MalI GATC 3 cut(s) 335, 664, 801
MboI GATC 3 cut(s) 333, 662, 799
MboII GAAGA 4 cut(s) 72, 470, 706, 734
MflI RGATCY 1 cut(s) 662
MluCI AATT 2 cut(s) 650, 674
MmeI TCCRAC 2 cut(s) 275, 601
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 2 cut(s) 261, 348
MspI CCGG 2 cut(s) 554, 797
MspR9I CCNGG 3 cut(s) 414, 555, 738
MvaI CCWGG 2 cut(s) 414, 738
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 665
NciI CCSGG 1 cut(s) 555
NcoI CCATGG 1 cut(s) 684
NdeII GATC 3 cut(s) 333, 662, 799
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 5 cut(s) 59, 409, 608, 688, 766
NlaIV GGNNCC 7 cut(s) 174, 210, 246, 411, 491, 580, 592
NmuCI GTSAC 1 cut(s) 679
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 4 cut(s) 38, 514, 517, 583
PpuMI RGGWCCY 3 cut(s) 74, 173, 245
Psp5II RGGWCCY 3 cut(s) 74, 173, 245
Psp6I CCWGG 2 cut(s) 412, 736
PspEI GGTNACC 1 cut(s) 679
PspGI CCWGG 2 cut(s) 412, 736
PspN4I GGNNCC 7 cut(s) 174, 210, 246, 411, 491, 580, 592
PspPI GGNCC 6 cut(s) 74, 128, 173, 245, 281, 623
PspPPI RGGWCCY 3 cut(s) 74, 173, 245
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 3 cut(s) 97, 270, 552
RsaNI GTAC 3 cut(s) 96, 269, 551
RseI CAYNNNNRTG 2 cut(s) 261, 348
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 4 cut(s) 37, 513, 516, 582
Sau3AI GATC 3 cut(s) 333, 662, 799
Sau96I GGNCC 6 cut(s) 74, 128, 173, 245, 281, 623
ScrFI CCNGG 3 cut(s) 414, 555, 738
SfaNI GCATC 2 cut(s) 715, 741
SinI GGWCC 5 cut(s) 74, 173, 245, 281, 623
SmiMI CAYNNNNRTG 2 cut(s) 261, 348
Sse9I AATT 2 cut(s) 650, 674
SsiI CCGC 3 cut(s) 36, 516, 582
SspI AATATT 1 cut(s) 717
StyD4I CCNGG 3 cut(s) 412, 553, 736
StyI CCWWGG 3 cut(s) 523, 574, 684
TaiI ACGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 223, 768
TasI AATT 2 cut(s) 650, 674
TauI GCSGC 3 cut(s) 39, 518, 584
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 2 cut(s) 366, 471
TspGWI ACGGA 1 cut(s) 477
VpaK11BI GGWCC 5 cut(s) 74, 173, 245, 281, 623
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 650
XmaJI CCTAGG 2 cut(s) 523, 574
XmiI GTMKAC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.