Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Forward (+)

39041728 .. 39045181

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGTGCTTGTGCTTCTTCTCATAGGGAACCCGGGTCAGCCATGAAACTTGGAGTGACATTCGGGTCCAAACCCGACAAGCTCTCCTCTATCCCTCCGTCGCCTATCAAGGAGAAGCCGACGACAAACGTTGGCCGTCCGATCACCGATCAATGGTCCCCTGCTCGCTCCACAGCCACGGCTTTTCGAGACTACGGTAGTAAAGAGGATGCCTTCTTTGATTCCAAGCCTTGGTTGGACTCAGATTGTGAAGATGACTTCTTCAGTGTCAATGGCGACTTCACTCCATCCCGTGGCAACACTCCGGTCCATCACAACTTCTCTCATGTCAACAAAACTCCATTTGGGAACAGAAGTCCTGTTTCCATTCCTGCTCCATCTCCAGTAGAAAAGAAAAAGAAACTTGCTGATCTCTTTCGCGAGAGCTTCAGAGATGGGGATGATGTTGATGATGCAAAGGATACCTCAGGTGATCAGACCATGACTAATGGAAAGATGGAAGTGAAGCCGACTGCCGAAGACCTCCCTCTAAAATCTCTGAATGGTACCCCTTATGTTTCTGGTAGTGAAAGGACAGCCAATGAGGTTCTAAGTGAAGACAGACCATTCAAGTCTACACAATGCTGCCTTCCTACCTTTGTTTCTTTCCGCAGCTCTAGTCAGAGGAGGAAGATGAGCCCTACCATTGCTGTAGCTGACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.66

Weight (kDa)

6.9

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	64
Acc65I	GGTACC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	2 cut(s)	231, 293
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	1 cut(s)	420
AciI	CCGC	1 cut(s)	649
AclI	AACGTT	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	247, 412
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	3 cut(s)	153, 231, 293
AgsI	TTSAA	1 cut(s)	610
AluBI	AGCT	5 cut(s)	82, 426, 654, 695, 704
AluI	AGCT	5 cut(s)	82, 426, 654, 695, 704
Alw26I	GTCTC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	624, 651
Asp718I	GGTACC	1 cut(s)	545
AspS9I	GGNCC	3 cut(s)	66, 156, 307
AsuC2I	CCSGG	2 cut(s)	33, 34
AsuHPI	GGTGA	2 cut(s)	136, 482
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	3 cut(s)	66, 156, 307
AxyI	CCTNAGG	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	525, 603
BbvI	GCAGC	2 cut(s)	611, 663
BccI	CCATC	5 cut(s)	295, 318, 385, 428, 490
BceAI	ACGGC	2 cut(s)	120, 195
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	33, 34
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	625, 652
BlsI	GCNGC	2 cut(s)	626, 653
Bme1390I	CCNGG	2 cut(s)	33, 34
Bme18I	GGWCC	3 cut(s)	66, 156, 307
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	3 cut(s)	66, 156, 307
BmiI	GGNNCC	4 cut(s)	30, 67, 158, 547
BmrFI	CCNGG	2 cut(s)	33, 34
BmsI	GCATC	2 cut(s)	199, 442
BpiI	GAAGAC	2 cut(s)	525, 603
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	33, 34
BsaJI	CCNNGG	4 cut(s)	32, 177, 230, 292
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 231, 293
Bse1I	ACTGG	1 cut(s)	383
Bse21I	CCTNAGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	684
BseDI	CCNNGG	4 cut(s)	32, 177, 230, 292
BseGI	GGATG	3 cut(s)	214, 287, 445
BseLI	CCNNNNNNNGG	3 cut(s)	153, 231, 293
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	255, 480
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	2 cut(s)	76, 679
BseXI	GCAGC	2 cut(s)	611, 663
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	33, 305
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	3 cut(s)	153, 231, 293
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp143I	GATC	4 cut(s)	141, 148, 409, 472
Bsp68I	TCGCGA	1 cut(s)	420
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	254, 479
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	30, 67, 158, 547
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	4 cut(s)	32, 177, 230, 292
BssMI	GATC	4 cut(s)	141, 148, 409, 472
BssT1I	CCWWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	241, 466, 590
BstDSI	CCRYGG	2 cut(s)	177, 292
BstF5I	GGATG	3 cut(s)	214, 287, 445
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	4 cut(s)	144, 151, 412, 475
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	141, 148, 409, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	31, 32
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	611, 663
BstV2I	GAAGAC	2 cut(s)	525, 603
Bsu36I	CCTNAGG	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	2 cut(s)	177, 292
BtsCI	GGATG	3 cut(s)	214, 287, 445
BtsIMutI	CAGTG	1 cut(s)	271
BtuMI	TCGCGA	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	66, 156, 307
Cfr9I	CCCGGG	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	3 cut(s)	43, 326, 481
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	3 cut(s)	241, 466, 590
DpnI	GATC	4 cut(s)	143, 150, 411, 474
DpnII	GATC	4 cut(s)	141, 148, 409, 472
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	680
Eco47I	GGWCC	3 cut(s)	66, 156, 307
Eco57I	CTGAAG	2 cut(s)	247, 412
Eco81I	CCTNAGG	1 cut(s)	466
Eco88I	CYCGRG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	46, 329, 484
FaiI	YATR	5 cut(s)	24, 44, 327, 482, 555
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	42, 325, 480
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	2 cut(s)	625, 652
FokI	GGATG	3 cut(s)	221, 274, 452
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	2 cut(s)	625, 652
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	2 cut(s)	625, 652
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	33, 305
Hin1II	CATG	3 cut(s)	46, 329, 484
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	2 cut(s)	221, 239
HpaII	CCGG	2 cut(s)	33, 305
HphI	GGTGA	2 cut(s)	136, 482
Hpy166II	GTNNAC	2 cut(s)	331, 615
Hpy188I	TCNGA	6 cut(s)	141, 244, 431, 477, 540, 663
Hpy188III	TCNNGA	2 cut(s)	188, 419
Hpy8I	GTNNAC	2 cut(s)	331, 615
Hpy99I	CGWCG	2 cut(s)	103, 124
HpyAV	CCTTC	2 cut(s)	223, 638
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	3 cut(s)	241, 466, 590
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	46, 329, 484
KpnI	GGTACC	1 cut(s)	549
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	141, 148, 409, 472
LmnI	GCTCC	2 cut(s)	173, 379
LpnPI	CCDG	8 cut(s)	46, 174, 318, 372, 384, 396, 453, 546
Lsp1109I	GCAGC	2 cut(s)	611, 663
LweI	GCATC	2 cut(s)	199, 442
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	143, 150, 411, 474
MboI	GATC	4 cut(s)	141, 148, 409, 472
MboII	GAAGA	6 cut(s)	9, 253, 263, 530, 608, 682
MhlI	GDGCHC	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	97, 105, 199, 475, 533, 537, 577, 657, 660
MspI	CCGG	2 cut(s)	33, 305
MspR9I	CCNGG	2 cut(s)	33, 34
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	701
NciI	CCSGG	2 cut(s)	33, 34
NdeII	GATC	4 cut(s)	141, 148, 409, 472
NlaIII	CATG	3 cut(s)	46, 329, 484
NlaIV	GGNNCC	4 cut(s)	30, 67, 158, 547
NmuCI	GTSAC	1 cut(s)	55
NruI	TCGCGA	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	2 cut(s)	231, 293
PkrI	GCNGC	2 cut(s)	626, 653
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	129
PspN4I	GGNNCC	4 cut(s)	30, 67, 158, 547
PspPI	GGNCC	3 cut(s)	66, 156, 307
RruI	TCGCGA	1 cut(s)	420
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SatI	GCNGC	2 cut(s)	625, 652
Sau3AI	GATC	4 cut(s)	141, 148, 409, 472
Sau96I	GGNCC	3 cut(s)	66, 156, 307
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	33, 34
SduI	GDGCHC	1 cut(s)	680
SfaNI	GCATC	2 cut(s)	199, 442
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	3 cut(s)	66, 156, 307
SmaI	CCCGGG	1 cut(s)	34
SsiI	CCGC	1 cut(s)	649
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	31, 32
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	624, 651
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	87
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	2 cut(s)	231, 293
VpaK11BI	GGWCC	3 cut(s)	66, 156, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.