Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Forward (+)

80794053 .. 80797695

Gene Structure 3643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG636700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTATGGAGTTAATAACTCCAACTGTTTATTAGCAGGTAGTAAAGATGAGGCCTTCTTTGATTCCAAGCCTTGGTTGGACTCAGATTGTGAAGATGACTTCTACAGTGTCAATGGTGACTTTACTCCATCTCGTGGCAACACTCCGGTCCATCAGAACTTCTCTCGTGTCAACAAAACTCCTTTTGAGAACAGAAGTCCTGTTTCTATTCCTGCTCCATCTCCAATACAAAAGAAAAAGAAACTTGCTGATCTCTTTCGCGAGAGCTTCAGAGATGGTGATGATGTTGATGATGCAACAGATCACTCAGGTGATCAAACCATGGCTAATGGAAAGATGGAAGTGAAGCCCACCGCCCAAGACCTCCCTCCAAAATCTCTGAATGGTACTCCTAATGTTTCTGGTAGCGAAAGGACAGCCAATGAATATGTAACTGAAGACAGACCAATTAAATCTACACAATGCTGCCTTCCTACCTTTGTTTCTTTTCGCAGCTCTAGTCAGAGGGGGAAGATGAGCCCTACCATTGCTGTAGTTGACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.02

Weight (kDa)

5.22

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AccB7I	CCANNNNNTGG	2 cut(s)	72, 134
AccII	CGCG	1 cut(s)	261
AciI	CCGC	1 cut(s)	354
AcuI	CTGAAG	2 cut(s)	253, 456
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	2 cut(s)	72, 134
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	267, 495, 545
AluI	AGCT	3 cut(s)	267, 495, 545
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	465, 492
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	128, 290, 323
AvaII	GGWCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	521
BauI	CACGAG	2 cut(s)	132, 165
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	452, 504
BccI	CCATC	5 cut(s)	136, 159, 226, 269, 331
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	103, 531
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	466, 493
BlsI	GCNGC	2 cut(s)	467, 494
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	71, 321
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 134
Bse3DI	GCAATG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	71, 321
BseLI	CCNNNNNNNGG	2 cut(s)	72, 134
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	96, 321
BseXI	GCAGC	2 cut(s)	452, 504
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	72, 134
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	250, 301, 313
Bsp19I	CCATGG	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	95, 320
BspFNI	CGCG	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	71, 321
BssMI	GATC	3 cut(s)	250, 301, 313
BssSI	CACGAG	2 cut(s)	132, 165
BssT1I	CCWWGG	2 cut(s)	71, 321
Bst2BI	CACGAG	2 cut(s)	132, 165
Bst4CI	ACNGT	2 cut(s)	26, 107
BstDEI	CTNAG	2 cut(s)	82, 307
BstDSI	CCRYGG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	3 cut(s)	253, 304, 316
BstMBI	GATC	3 cut(s)	250, 301, 313
BstSFI	CTRYAG	2 cut(s)	103, 531
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	452, 504
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	112
BtuMI	TCGCGA	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	9 cut(s)	53, 70, 267, 326, 349, 419, 495, 519, 545
CviKI_1	RGCY	9 cut(s)	53, 70, 267, 326, 349, 419, 495, 519, 545
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	2 cut(s)	82, 307
DpnI	GATC	3 cut(s)	252, 303, 315
DpnII	GATC	3 cut(s)	250, 301, 313
Eco130I	CCWWGG	2 cut(s)	71, 321
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	253, 456
EcoT14I	CCWWGG	2 cut(s)	71, 321
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	2 cut(s)	71, 321
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	6, 323, 429
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	466, 493
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	466, 493
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	2 cut(s)	466, 493
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	2 cut(s)	172, 538
HindII	GTYRAC	2 cut(s)	172, 538
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	2 cut(s)	62, 80
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	128, 290, 323
Hpy166II	GTNNAC	2 cut(s)	172, 538
Hpy188I	TCNGA	5 cut(s)	85, 156, 272, 381, 504
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	2 cut(s)	172, 538
HpyAV	CCTTC	2 cut(s)	64, 479
HpyCH4III	ACNGT	2 cut(s)	26, 107
HpyCH4V	TGCA	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	82, 307
Hsp92II	CATG	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	250, 301, 313
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	21, 159, 213, 225, 294, 387
Lsp1109I	GCAGC	2 cut(s)	452, 504
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	116, 430
MalI	GATC	3 cut(s)	252, 303, 315
MboI	GATC	3 cut(s)	250, 301, 313
MboII	GAAGA	3 cut(s)	104, 449, 523
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	45, 57
MnlI	CCTC	4 cut(s)	43, 374, 378, 498
MseI	TTAA	2 cut(s)	12, 450
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	250, 301, 313
NlaIII	CATG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	116
NruI	TCGCGA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	2 cut(s)	72, 134
PkrI	GCNGC	2 cut(s)	467, 494
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	12, 450
SatI	GCNGC	2 cut(s)	466, 493
Sau3AI	GATC	3 cut(s)	250, 301, 313
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	7 cut(s)	40, 269, 313, 366, 479, 497, 547
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	103, 531
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	447
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	71, 321
TaaI	ACNGT	2 cut(s)	26, 107
TasI	AATT	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	12, 450
Tru9I	TTAA	2 cut(s)	12, 450
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	465, 492
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	2 cut(s)	72, 134
VpaK11BI	GGWCC	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.