Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Forward (+)

16370368 .. 16372294

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATAAGCCACGACTCGTTTCCGATGAATAATTCGCCGGTGACGGCGGAGGAGAACGGTGGTGTTACGGAAAAATCCATACAGGAGAACGGTGGTGTTACGGAAAAATCCATTTTTTTGTCTCCTTCTACTAAGAAAATATCTGAATCGCCGGTAAAGGAGAATTTAGCTCCGGTGGCTACTCCGAAGACGGTGGATAATGGTTTAAGTGCTCAAGTGAAATCTCGGTGGTCGTTTTCTTCTTCTAAGAGAAGCTTTGGAAGTAGTAAAGATGAAACCTATTTTGATTCACATCAATGGCAACAATCTGATTCTGAAGACGATTTCTATAGCGTTCGTGGCGATTTCACTCCATCAGTTGGAAACACTCCAAGGTGTAGTATCTCAGAGAAGCTTCCTCGTATTCACAGCCCTTTATTTGAAGGAGAGAAACCTCGAGTATCGTTTTCGCATTCTCCTGCACCGCGGAGAAAGAAACTAGGCGAACTATTTAGAGATAGTATAAGAGAAGAACGAGCAGTAATTTTAGAAGAGTCATCGGAATACCAAAGTGAAAAAAGTAAAAAATCATCATGTGATAATTCGGGTGAGCTCAAAGTCATTGAAGAATCTGTAAAAGAGAAGAAGAATCTTAAATCTCCTCTGAATTATCACCATCGTTGTCTTCCGAGATTCTCGTCTTTTAAAGGAAGTTTAATGGACAAGAGAAAGAAGAAGAAGAAGAAAATTCATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.77

Weight (kDa)

9.4

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccII	CGCG	1 cut(s)	466
AciI	CCGC	3 cut(s)	47, 464, 466
AcsI	RAATTY	2 cut(s)	163, 726
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	422, 605
AluBI	AGCT	4 cut(s)	170, 255, 394, 592
AluI	AGCT	4 cut(s)	170, 255, 394, 592
Alw21I	GWGCWC	2 cut(s)	214, 594
Alw26I	GTCTC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	435
ApoI	RAATTY	2 cut(s)	163, 726
AsuHPI	GGTGA	3 cut(s)	52, 599, 644
AvaI	CYCGRG	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	594
BbsI	GAAGAC	3 cut(s)	194, 324, 656
Bbv12I	GWGCWC	2 cut(s)	214, 594
BccI	CCATC	2 cut(s)	361, 663
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	435
BpiI	GAAGAC	3 cut(s)	194, 324, 656
BpuEI	CTTGAG	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	371, 464
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	2 cut(s)	37, 151
Bse8I	GATNNNNATC	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	371, 464
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	65, 630
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	466
BsiHKAI	GWGCWC	2 cut(s)	214, 594
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	3 cut(s)	38, 152, 173
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	214, 594
BspACI	CCGC	3 cut(s)	47, 464, 466
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	37, 151
BssAI	RCCGGY	2 cut(s)	37, 151
BssECI	CCNNGG	2 cut(s)	371, 464
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	59, 92, 193
Bst6I	CTCTTC	1 cut(s)	525
BstDEI	CTNAG	3 cut(s)	132, 246, 385
BstDSI	CCRYGG	1 cut(s)	464
BstFNI	CGCG	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 339
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	466
BstV2I	GAAGAC	3 cut(s)	194, 324, 656
BtgI	CCRYGG	1 cut(s)	464
Cfr10I	RCCGGY	2 cut(s)	37, 151
Cfr42I	CCGCGG	1 cut(s)	467
CviAII	CATG	2 cut(s)	573, 731
CviJI	RGCY	7 cut(s)	9, 170, 179, 255, 394, 411, 592
CviKI_1	RGCY	7 cut(s)	9, 170, 179, 255, 394, 411, 592
DdeI	CTNAG	3 cut(s)	132, 246, 385
DraI	TTTAAA	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	576, 734
FaiI	YATR	5 cut(s)	80, 330, 503, 574, 732
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	2 cut(s)	572, 730
FriOI	GRGCYC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	479
HapII	CCGG	3 cut(s)	38, 152, 173
Hin1II	CATG	2 cut(s)	576, 734
HindIII	AAGCTT	2 cut(s)	253, 392
HinfI	GANTC	8 cut(s)	14, 146, 287, 311, 533, 608, 628, 672
HpaII	CCGG	3 cut(s)	38, 152, 173
HphI	GGTGA	3 cut(s)	52, 599, 644
Hpy188I	TCNGA	9 cut(s)	24, 145, 186, 310, 316, 388, 541, 645, 669
HpyAV	CCTTC	2 cut(s)	135, 416
HpyCH4III	ACNGT	3 cut(s)	59, 92, 193
HpyCH4V	TGCA	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 339
HpyF3I	CTNAG	3 cut(s)	132, 246, 385
Hsp92II	CATG	2 cut(s)	576, 734
KspI	CCGCGG	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	51, 68, 165, 186, 471
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	40, 64, 97
MhlI	GDGCHC	2 cut(s)	214, 594
MluCI	AATT	6 cut(s)	31, 163, 522, 580, 646, 726
MlyI	GAGTC	2 cut(s)	8, 542
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	43, 408, 444, 651
MseI	TTAA	4 cut(s)	206, 633, 684, 695
MslI	CAYNNNNRTG	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	3 cut(s)	38, 152, 173
Mva1269I	GAATGC	1 cut(s)	451
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	176, 339
NlaIII	CATG	2 cut(s)	576, 734
NmuCI	GTSAC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	435
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	6 cut(s)	146, 287, 311, 608, 628, 672
PflMI	CCANNNNNTGG	1 cut(s)	359
PleI	GAGTC	2 cut(s)	8, 541
PpsI	GAGTC	2 cut(s)	8, 541
Psp124BI	GAGCTC	1 cut(s)	594
PspXI	VCTCGAGB	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	594
SacII	CCGCGG	1 cut(s)	467
SaqAI	TTAA	4 cut(s)	206, 633, 684, 695
SchI	GAGTC	2 cut(s)	8, 542
SduI	GDGCHC	2 cut(s)	214, 594
SetI	ASST	7 cut(s)	172, 257, 281, 377, 396, 436, 594
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	435
Sfr303I	CCGCGG	1 cut(s)	467
SgrAI	CRCCGGYG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	213, 435
SmoI	CTYRAG	2 cut(s)	213, 435
Sse9I	AATT	6 cut(s)	31, 163, 522, 580, 646, 726
SsiI	CCGC	3 cut(s)	47, 464, 466
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	3 cut(s)	59, 92, 193
TaqI	TCGA	1 cut(s)	436
TasI	AATT	6 cut(s)	31, 163, 522, 580, 646, 726
TfiI	GAWTC	6 cut(s)	146, 287, 311, 608, 628, 672
Tru1I	TTAA	4 cut(s)	206, 633, 684, 695
Tru9I	TTAA	4 cut(s)	206, 633, 684, 695
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	41, 288, 719
TspGWI	ACGGA	2 cut(s)	83, 116
Van91I	CCANNNNNTGG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	163, 726
XhoI	CTCGAG	1 cut(s)	435
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.