Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1168950 .. 1172247

Gene Structure 3298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1013900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGTTCATGTGTTTCGGTTCATAAGGACGCAGATTCCGTCTTGAAGCTCCGACATTCATTCGGGTCCAAAACCGACAACAAGCTCGTCATCCCACCATTCCCAGTCAAGGTTGATAAACTGTCTTCCAATGGTGACCGTCCGATTGCCGATCTTCCACTTAAATCTCAATGGTCGCCCTCTCACGCCACCGCCAACGCCACCACCTTCCGGGACTGCGGTAGTAGAGAGGATTCCTATTTTGATACCCGGCAGTGGTTGGACTCGGATTGTGAAGATGATTTTTACAGTGTGAATGGGGATTTTACTCCATCTCGCGGCAACACTCCTGTCCATCAGTACTTACCCGCTGGTTCCTCTCTAATCGACAAAACTCCTTTCGAGAACAGAATTCCTGGTCCAACTCCAACGCCAACAGAAAAGAAGAAGAAACTACTTGAGCTTTTTCAGGAGAGCTTCAAAGATGATGAAGAAGCGGACAATGAAGTAAAACCGCCAGCTGCAGCCAGCCTCCCTCCAAAGTTTGTCAATGGAACTGATTCCGTGTGTAGTAGCGAGAGGACAATAAGTGGAGATGTTCCAACTGCGATTGAGACGAAGAAGCCATTTAGGACCTCGCAGTGCTGCCTTCCGAGCTTAGTTTCTTGCCGCAGCTCGAGTCAGAGGAAGAAGATGAGCCCTACCATTGCTGTAGGTGATAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.73

Weight (kDa)

6.43

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	318
AciI	CCGC	7 cut(s)	192, 219, 318, 348, 476, 494, 649
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	109, 210, 255, 317
AgsI	TTSAA	2 cut(s)	46, 460
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	8 cut(s)	49, 85, 442, 456, 500, 636, 654, 704
AluI	AGCT	8 cut(s)	49, 85, 442, 456, 500, 636, 654, 704
Alw26I	GTCTC	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	655
ApeKI	GCWGC	4 cut(s)	500, 503, 624, 651
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	538
AspS9I	GGNCC	3 cut(s)	66, 398, 612
AsuC2I	CCSGG	2 cut(s)	212, 250
AsuHPI	GGTGA	2 cut(s)	146, 707
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	3 cut(s)	66, 398, 612
BanII	GRGCYC	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	487, 515, 611, 663
BccI	CCATC	2 cut(s)	319, 342
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	2 cut(s)	212, 250
BcoDI	GTCTC	1 cut(s)	587
BfmI	CTRYAG	2 cut(s)	501, 690
BisI	GCNGC	6 cut(s)	319, 501, 504, 625, 649, 652
BlsI	GCNGC	6 cut(s)	320, 502, 505, 626, 650, 653
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	3 cut(s)	212, 250, 396
Bme18I	GGWCC	3 cut(s)	66, 398, 612
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	3 cut(s)	66, 398, 612
BmiI	GGNNCC	2 cut(s)	67, 355
BmrFI	CCNGG	3 cut(s)	212, 250, 396
BmrI	ACTGGG	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	212, 250
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 210, 255, 317
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	4 cut(s)	109, 210, 255, 317
BseMI	GCAATG	1 cut(s)	684
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	487, 515, 611, 663
Bsh1236I	CGCG	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	2 cut(s)	211, 250
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	4 cut(s)	109, 210, 255, 317
BsmAI	GTCTC	1 cut(s)	587
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	7 cut(s)	192, 219, 318, 348, 476, 494, 649
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	67, 355
BspMAI	CTGCAG	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	123, 140, 290
BstC8I	GCNNGC	2 cut(s)	498, 508
BstDEI	CTNAG	1 cut(s)	637
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	318
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	633
BstNI	CCWGG	1 cut(s)	396
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	210, 248, 394
BstSFI	CTRYAG	2 cut(s)	501, 690
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	487, 515, 611, 663
BstV2I	GAAGAC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	2 cut(s)	260, 626
BtsIMutI	CAGTG	3 cut(s)	260, 295, 626
Cac8I	GCNNGC	2 cut(s)	498, 508
Cfr13I	GGNCC	3 cut(s)	66, 398, 612
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	9
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	637
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	680
Eco47I	GGWCC	3 cut(s)	66, 398, 612
Eco88I	CYCGRG	1 cut(s)	655
Eco91I	GGTNACC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	612
EcoO65I	GGTNACC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	1 cut(s)	12
FaiI	YATR	2 cut(s)	10, 24
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	8
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	319, 501, 504, 625, 649, 652
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	6 cut(s)	319, 501, 504, 625, 649, 652
GluI	GCNGC	6 cut(s)	319, 501, 504, 625, 649, 652
HapII	CCGG	2 cut(s)	211, 250
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	5 cut(s)	35, 233, 263, 539, 658
HpaII	CCGG	2 cut(s)	211, 250
HphI	GGTGA	2 cut(s)	146, 707
Hpy188I	TCNGA	5 cut(s)	53, 144, 268, 633, 663
Hpy188III	TCNNGA	3 cut(s)	43, 382, 449
HpyAV	CCTTC	2 cut(s)	217, 638
HpyCH4III	ACNGT	3 cut(s)	123, 140, 290
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	633
HpyF3I	CTNAG	1 cut(s)	637
Hsp92II	CATG	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	4 cut(s)	487, 515, 611, 663
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	9 cut(s)	117, 146, 287, 436, 439, 482, 610, 679, 682
MhlI	GDGCHC	1 cut(s)	680
MluCI	AATT	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	257, 667
MmeI	TCCRAC	5 cut(s)	76, 240, 425, 431, 605
MnlI	CCTC	8 cut(s)	190, 223, 367, 521, 525, 552, 625, 657
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	350, 500
MspI	CCGG	2 cut(s)	211, 250
MspR9I	CCNGG	3 cut(s)	212, 250, 396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	633
NciI	CCSGG	2 cut(s)	212, 250
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	2 cut(s)	67, 355
NmuCI	GTSAC	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	35, 233, 539
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	6 cut(s)	320, 502, 505, 626, 650, 653
PleI	GAGTC	2 cut(s)	257, 666
PpsI	GAGTC	2 cut(s)	257, 666
PpuMI	RGGWCCY	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	67, 355
PspPI	GGNCC	3 cut(s)	66, 398, 612
PspPPI	RGGWCCY	1 cut(s)	612
PspXI	VCTCGAGB	1 cut(s)	655
PstI	CTGCAG	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	6 cut(s)	319, 501, 504, 625, 649, 652
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	3 cut(s)	66, 398, 612
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	2 cut(s)	257, 667
ScrFI	CCNGG	3 cut(s)	212, 250, 396
SduI	GDGCHC	1 cut(s)	680
SfcI	CTRYAG	2 cut(s)	501, 690
Sfr274I	CTCGAG	1 cut(s)	655
SinI	GGWCC	3 cut(s)	66, 398, 612
SlaI	CTCGAG	1 cut(s)	655
SmlI	CTYRAG	2 cut(s)	437, 655
SmoI	CTYRAG	2 cut(s)	437, 655
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	7 cut(s)	192, 219, 318, 348, 476, 494, 649
StyD4I	CCNGG	3 cut(s)	210, 248, 394
TaaI	ACNGT	3 cut(s)	123, 140, 290
TaqI	TCGA	3 cut(s)	366, 381, 656
TasI	AATT	1 cut(s)	390
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	321, 651
TfiI	GAWTC	3 cut(s)	35, 233, 539
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	260, 295, 626
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	4 cut(s)	500, 503, 624, 651
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	11, 48, 483, 498
TspGWI	ACGGA	2 cut(s)	28, 532
TspRI	CASTG	3 cut(s)	260, 295, 626
VpaK11BI	GGWCC	3 cut(s)	66, 398, 612
XapI	RAATTY	1 cut(s)	390
XhoI	CTCGAG	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	538
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.