Prupe.3G303900_v2.0.a1

At3g27210-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008381
Physical Location & Seq
Forward (+)
26703964 .. 26707126
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G303900.2

Sequence Viewer

Length: 696 bp
ATGGGTTCATGTGTTTCGATTCATAGGGACGCGGACTCCGCCATGAAACTCAGACTGTCATTTGGGTCCAAAACCGACAAACTCGTCATCCCACCCTTCCCAGTCAACGACAAACTCGCCAATGGCGACCGCCCGATCAACGATCCTCCTCTTAAATCTCATTGGTCGCCCTCTCGCTCCGTCACCGCTTTCCGGGACTATGCAGGTAGTAGAGAGGAGGCCTTTTTTGATACGAAGCCGTGGTTGGACTCAGATTGTGAAGATGACTTCTACAGTGTCAATGGTGACTTTACCCCATCTCGCGGCAACACTCCCGTCCATCACAGCTTGTCCATTGGCTCCTCCCGAATGAACAAAACTCCTTTCGAGGACAGAATTCCTGGTCCATCTCCAACAGAAAAGAAGAAGAAACTAATTGAACTTTTTCAAGAGAGCTTAAAAAATGATGACGACGATGACAATGCAGTAAAGCCAACTACACCTAGTCTCCCACCAAAATCTGTCAATGGTACTCCTTCTGTCCCTGCAACTAATTCCGTCTCTAGTAGCGAAAGGACAGCAAACGGAGATGTTGCAACTGAGAAAGAGAAACCAATTAGGTCTGTGCAGTGCTGCCTTCCCAGCTTAGTTTCTTGCCGTAGCTCGAGTCAGAGGAAGAAGATGAGCCCTACCATTGCTGTAGTTGATAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.28

Weight (kDa)

7.63

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 194
AccII CGCG 2 cut(s) 32, 303
AciI CCGC 5 cut(s) 32, 39, 130, 186, 303
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 2 cut(s) 192, 302
AgsI TTSAA 2 cut(s) 419, 428
AjnI CCWGG 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 4 cut(s) 327, 435, 624, 642
AluI AGCT 4 cut(s) 327, 435, 624, 642
Alw26I GTCTC 2 cut(s) 491, 544
AlwI GGATC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 66, 383
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 175, 296
AvaI CYCGRG 1 cut(s) 643
AvaII GGWCC 2 cut(s) 66, 383
BanII GRGCYC 1 cut(s) 668
BbvI GCAGC 1 cut(s) 599
BccI CCATC 3 cut(s) 304, 327, 394
BceAI ACGGC 2 cut(s) 223, 621
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 1 cut(s) 381
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 491, 544
BfaI CTAG 2 cut(s) 483, 543
BfmI CTRYAG 2 cut(s) 271, 678
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 2 cut(s) 304, 613
BlsI GCNGC 2 cut(s) 305, 614
Bme1390I CCNGG 2 cut(s) 194, 381
Bme18I GGWCC 2 cut(s) 66, 383
BmeT110I CYCGRG 1 cut(s) 643
BmgT120I GGNCC 2 cut(s) 66, 383
BmiI GGNNCC 2 cut(s) 67, 340
BmrFI CCNGG 2 cut(s) 194, 381
BmrI ACTGGG 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 471, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 302
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 672
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 192, 302
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 3 cut(s) 64, 264, 570
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 3 cut(s) 138, 230, 331
BseXI GCAGC 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 2 cut(s) 32, 303
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 643
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 3 cut(s) 41, 209, 506
BslI CCNNNNNNNGG 2 cut(s) 192, 302
BsmAI GTCTC 2 cut(s) 491, 544
BsmBI CGTCTC 1 cut(s) 544
BsmFI GGGAC 3 cut(s) 41, 209, 506
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 668
Bsp143I GATC 2 cut(s) 135, 142
BspACI CCGC 5 cut(s) 32, 39, 130, 186, 303
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 3 cut(s) 63, 263, 571
BspFNI CGCG 2 cut(s) 32, 303
BspLI GGNNCC 2 cut(s) 67, 340
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 672
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 2 cut(s) 135, 142
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 57, 275
BstDEI CTNAG 4 cut(s) 50, 250, 579, 625
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 2 cut(s) 32, 303
BstKTI GATC 2 cut(s) 138, 145
BstMAI GTCTC 2 cut(s) 491, 544
BstMBI GATC 2 cut(s) 135, 142
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 38, 621
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 192, 379
BstSFI CTRYAG 2 cut(s) 271, 678
BstUI CGCG 2 cut(s) 32, 303
BstV1I GCAGC 1 cut(s) 599
BsuRI GGCC 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 2 cut(s) 280, 614
BveI ACCTGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 66, 383
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 510
CviAII CATG 2 cut(s) 9, 43
CviJI RGCY 9 cut(s) 221, 238, 327, 339, 435, 472, 624, 642, 666
CviKI_1 RGCY 9 cut(s) 221, 238, 327, 339, 435, 472, 624, 642, 666
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 4 cut(s) 50, 250, 579, 625
DpnI GATC 2 cut(s) 137, 144
DpnII GATC 2 cut(s) 135, 142
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 668
Eco47I GGWCC 2 cut(s) 66, 383
Eco88I CYCGRG 1 cut(s) 643
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 668
Esp3I CGTCTC 1 cut(s) 544
FaeI CATG 2 cut(s) 12, 46
FaiI YATR 4 cut(s) 10, 24, 44, 201
FaqI GGGAC 3 cut(s) 41, 209, 506
FatI CATG 2 cut(s) 8, 42
Fnu4HI GCNGC 2 cut(s) 304, 613
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 2 cut(s) 304, 613
FspBI CTAG 2 cut(s) 483, 543
GluI GCNGC 2 cut(s) 304, 613
GsaI CCCAGC 1 cut(s) 624
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 12, 46
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 4 cut(s) 19, 35, 248, 646
HpaII CCGG 1 cut(s) 193
HphI GGTGA 2 cut(s) 175, 296
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 53, 253, 651
Hpy188III TCNNGA 2 cut(s) 345, 428
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 106, 525, 626
HpyCH4III ACNGT 2 cut(s) 57, 275
HpyCH4V TGCA 5 cut(s) 203, 464, 527, 575, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 621
HpyF3I CTNAG 4 cut(s) 50, 250, 579, 625
Hsp92II CATG 2 cut(s) 12, 46
Kzo9I GATC 2 cut(s) 135, 142
LmnI GCTCC 2 cut(s) 182, 344
LpnPI CCDG 7 cut(s) 114, 189, 206, 366, 393, 537, 634
Lsp1109I GCAGC 1 cut(s) 599
MaeI CTAG 2 cut(s) 483, 543
MaeIII GTNAC 2 cut(s) 181, 284
MalI GATC 2 cut(s) 137, 144
MboI GATC 2 cut(s) 135, 142
MboII GAAGA 5 cut(s) 272, 415, 418, 667, 670
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 4 cut(s) 375, 414, 532, 594
MlyI GAGTC 3 cut(s) 29, 242, 655
MmeI TCCRAC 2 cut(s) 225, 416
MnlI CCTC 8 cut(s) 156, 159, 181, 208, 211, 352, 361, 645
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 2 cut(s) 153, 437
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 2 cut(s) 194, 381
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 2 cut(s) 32, 303
MwoI GCNNNNNNNGC 2 cut(s) 38, 621
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 135, 142
NlaIII CATG 2 cut(s) 12, 46
NlaIV GGNNCC 2 cut(s) 67, 340
NmuCI GTSAC 2 cut(s) 181, 284
PaeR7I CTCGAG 1 cut(s) 643
PceI AGGCCT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 2 cut(s) 305, 614
PleI GAGTC 3 cut(s) 29, 242, 654
PpsI GAGTC 3 cut(s) 29, 242, 654
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 67, 340
PspPI GGNCC 2 cut(s) 66, 383
PspXI VCTCGAGB 1 cut(s) 643
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 153, 437
SatI GCNGC 2 cut(s) 304, 613
Sau3AI GATC 2 cut(s) 135, 142
Sau96I GGNCC 2 cut(s) 66, 383
SchI GAGTC 3 cut(s) 29, 242, 655
ScrFI CCNGG 2 cut(s) 194, 381
SduI GDGCHC 1 cut(s) 668
SetI ASST 7 cut(s) 208, 329, 437, 484, 602, 626, 644
SfcI CTRYAG 2 cut(s) 271, 678
Sfr274I CTCGAG 1 cut(s) 643
SinI GGWCC 2 cut(s) 66, 383
SlaI CTCGAG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 4 cut(s) 375, 414, 532, 594
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 5 cut(s) 32, 39, 130, 186, 303
SspMI CTAG 2 cut(s) 483, 543
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 192, 379
TaaI ACNGT 2 cut(s) 57, 275
TaqI TCGA 3 cut(s) 17, 366, 644
TasI AATT 4 cut(s) 375, 414, 532, 594
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 153, 437
Tru9I TTAA 2 cut(s) 153, 437
TscAI CASTG 2 cut(s) 280, 614
TseFI GTSAC 2 cut(s) 181, 284
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 2 cut(s) 181, 284
TspDTI ATGAA 3 cut(s) 11, 59, 365
TspGWI ACGGA 3 cut(s) 169, 526, 579
TspRI CASTG 2 cut(s) 280, 614
VpaK11BI GGWCC 2 cut(s) 66, 383
XapI RAATTY 1 cut(s) 375
XhoI CTCGAG 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 2 cut(s) 483, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.