Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015795.1

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Reverse (-)

21858 .. 24660

Gene Structure 2803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015795.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgggtacatgtgcttcggctcatagggaatccgggtcggccatgaaactcggaatgtctttcgggtccaaaccggacacgctctcctctattctaccgtccccggtcaaagagaaaccgacgacaaacggcggccgtccgatcaacgatgaatggtcgcctgctcgccccacagccacggctttccgagactacggtagtaaagatgaggccttctttgattccaagccttggttggactcagattgtgaagatgacttctacagtgtcaatggtgactttactccatctcgtggcaacactccggtccatcagaacttctctcgtgtcaacaaaactccttttgagaacagaagtcctgtttctattcctgctccaccatctccaatacaaaagaaaaagaaacttgctgatctctttcgcgagagcttcagagatggtgatgacgttgatgatgcaacagatcactcaggtgatcaaaccatgactaatggaaagatggaagtgaagcccaccgcccaagacctccctccaaaatctctgaatggtactcctaatgtttctggtagcgaaaggacagccaatgaatatgtaactgaagacagaccaattaaatctacacaatgctgccttcctacctttgtttcttttcgcagctctagtcagagggggaagatgagccctaccattgctgtagttggcaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.69

Weight (kDa)

6.32

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	231, 293
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	132, 516
AcoI	YGGCCR	2 cut(s)	39, 133
AcuI	CTGAAG	2 cut(s)	415, 618
AfaI	GTAC	2 cut(s)	7, 550
AfiI	CCNNNNNNNGG	2 cut(s)	231, 293
AflIII	ACRYGT	1 cut(s)	8
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	3 cut(s)	429, 657, 707
AluI	AGCT	3 cut(s)	429, 657, 707
Alw26I	GTCTC	1 cut(s)	183
AoxI	GGCC	3 cut(s)	39, 133, 210
ApeKI	GCWGC	2 cut(s)	627, 654
AspS9I	GGNCC	2 cut(s)	66, 307
AsuC2I	CCSGG	2 cut(s)	34, 104
AsuHPI	GGTGA	3 cut(s)	287, 452, 485
AvaII	GGWCC	2 cut(s)	66, 307
BanII	GRGCYC	1 cut(s)	683
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BauI	CACGAG	2 cut(s)	291, 324
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	614, 666
BccI	CCATC	5 cut(s)	295, 318, 388, 431, 493
BceAI	ACGGC	3 cut(s)	120, 145, 195
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	34, 104
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	2 cut(s)	262, 693
BisI	GCNGC	3 cut(s)	133, 628, 655
BlsI	GCNGC	3 cut(s)	134, 629, 656
Bme1390I	CCNGG	2 cut(s)	34, 104
Bme18I	GGWCC	2 cut(s)	66, 307
BmgT120I	GGNCC	2 cut(s)	66, 307
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	34, 104
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	606
BpuMI	CCSGG	2 cut(s)	34, 104
BsaJI	CCNNGG	3 cut(s)	102, 177, 230
BsaWI	WCCGGW	2 cut(s)	73, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 293
Bse3DI	GCAATG	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	102, 177, 230
BseLI	CCNNNNNNNGG	2 cut(s)	231, 293
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	255, 483
BseRI	GAGGAG	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	614, 666
Bsh1236I	CGCG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	41, 135, 212
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	4 cut(s)	33, 74, 104, 305
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	231, 293
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	41, 135, 212
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	4 cut(s)	141, 412, 463, 475
Bsp68I	TCGCGA	1 cut(s)	423
BspACI	CCGC	2 cut(s)	132, 516
BspANI	GGCC	3 cut(s)	41, 135, 212
BspCNI	CTCAG	2 cut(s)	254, 482
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	687
BssECI	CCNNGG	3 cut(s)	102, 177, 230
BssMI	GATC	4 cut(s)	141, 412, 463, 475
BssSI	CACGAG	2 cut(s)	291, 324
BssT1I	CCWWGG	1 cut(s)	230
Bst2BI	CACGAG	2 cut(s)	291, 324
Bst4CI	ACNGT	3 cut(s)	99, 197, 266
BstC8I	GCNNGC	2 cut(s)	162, 166
BstDEI	CTNAG	2 cut(s)	241, 469
BstDSI	CCRYGG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	4 cut(s)	144, 415, 466, 478
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	141, 412, 463, 475
BstMCI	CGRYCG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	32, 102
BstSFI	CTRYAG	2 cut(s)	262, 693
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	614, 666
BstV2I	GAAGAC	1 cut(s)	606
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	41, 135, 212
BtgI	CCRYGG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	271
BtuMI	TCGCGA	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	162, 166
Cfr13I	GGNCC	2 cut(s)	66, 307
Csp6I	GTAC	2 cut(s)	6, 549
CviAII	CATG	3 cut(s)	9, 43, 484
CviQI	GTAC	2 cut(s)	6, 549
DdeI	CTNAG	2 cut(s)	241, 469
DpnI	GATC	4 cut(s)	143, 414, 465, 477
DpnII	GATC	4 cut(s)	141, 412, 463, 475
EaeI	YGGCCR	2 cut(s)	39, 133
EagI	CGGCCG	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	683
Eco47I	GGWCC	2 cut(s)	66, 307
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	415, 618
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	3 cut(s)	12, 46, 487
FaiI	YATR	5 cut(s)	10, 24, 44, 485, 591
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	8, 42, 483
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	133, 628, 655
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	133, 628, 655
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	3 cut(s)	133, 628, 655
HaeIII	GGCC	3 cut(s)	41, 135, 212
HapII	CCGG	4 cut(s)	33, 74, 104, 305
Hin1II	CATG	3 cut(s)	12, 46, 487
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	3 cut(s)	29, 221, 239
HpaII	CCGG	4 cut(s)	33, 74, 104, 305
HphI	GGTGA	3 cut(s)	287, 452, 485
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	8 cut(s)	53, 141, 188, 244, 315, 434, 543, 666
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	223, 641
HpyCH4III	ACNGT	3 cut(s)	99, 197, 266
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	241, 469
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	12, 46, 487
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	141, 412, 463, 475
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	9 cut(s)	46, 87, 117, 174, 318, 372, 384, 456, 549
Lsp1109I	GCAGC	2 cut(s)	614, 666
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	275, 592
MalI	GATC	4 cut(s)	143, 414, 465, 477
MboI	GATC	4 cut(s)	141, 412, 463, 475
MboII	GAAGA	3 cut(s)	263, 611, 685
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	97, 202, 536, 540, 660
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	4 cut(s)	33, 74, 104, 305
MspR9I	CCNGG	2 cut(s)	34, 104
MvnI	CGCG	1 cut(s)	423
NciI	CCSGG	2 cut(s)	34, 104
NdeII	GATC	4 cut(s)	141, 412, 463, 475
NlaIII	CATG	3 cut(s)	12, 46, 487
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	275
NruI	TCGCGA	1 cut(s)	423
NspI	RCATGY	1 cut(s)	12
OliI	CACNNNNGTG	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	212
PciI	ACATGT	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	29, 221
PflMI	CCANNNNNTGG	2 cut(s)	231, 293
PkrI	GCNGC	3 cut(s)	134, 629, 656
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PscI	ACATGT	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	66, 307
RruI	TCGCGA	1 cut(s)	423
RsaI	GTAC	2 cut(s)	7, 550
RsaNI	GTAC	2 cut(s)	6, 549
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	3 cut(s)	133, 628, 655
Sau3AI	GATC	4 cut(s)	141, 412, 463, 475
Sau96I	GGNCC	2 cut(s)	66, 307
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	34, 104
SduI	GDGCHC	1 cut(s)	683
SetI	ASST	7 cut(s)	431, 450, 475, 528, 641, 659, 709
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	2 cut(s)	262, 693
SinI	GGWCC	2 cut(s)	66, 307
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	1 cut(s)	609
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	132, 516
SspMI	CTAG	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	32, 102
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	3 cut(s)	99, 197, 266
TaiI	ACGT	1 cut(s)	450
TasI	AATT	1 cut(s)	609
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	29, 221
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	627, 654
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	59, 165, 600
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	2 cut(s)	231, 293
VpaK11BI	GGWCC	2 cut(s)	66, 307
XceI	RCATGY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.