Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

10305849 .. 10310492

Gene Structure 4644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGAAAAGAGGAGGAGGAAGTAGTGGAGGTTCGGGATCATCAGCAGAAGCAGAAGTGAGAAAAGGACCATGGACGATGGAAGAAGATCTTATTCTTATCAACTATATCGCCAACCACGGCGATGGTGTTTGGAATTCTCTCGCCAAATCTGCAGGTCTAAAACGAACCGGGAAAAGTTGCCGGCTCCGGTGGCTGAACTATCTCCGCCCCGACGTACGACGGGGAAACATCACTCCAGAAGAGCAACTTATCATCATGGAACTTCATGCTAAGTGGGGAAACAGGTGGTCGAAAATCGCCAAACATCTTCCAGGAAGAACGGACAACGAGATCAAAAATTTCTGGAGGACAAGAATTCAAAAATACATCAAGCAATCGGATGTAACAACAACATCGTCCGTTGGATCTCATCATAGCTCAGAGATCAACGATCAAGCTGCAAGCACGTCGAGCCATAATGTCTTTTGTACACAAGATCAAGCGATGGAGACTTATTCTCCTACACCGACATCATATCAACATACCAATATGGAATTCAACTATGGTAACTATTCGGCCGCGGCAGTGACGGCAACCGTGGATTATCCAGTACCGATGACCGTTGATGATCAAACCGGTGAAAACTATTGGGGCATGGATGATATTTGGTCATCAATGCATTTATTGAATGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

6.44

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 69	9.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 82	5.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 118	3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	79 - 128	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccII	CGCG	1 cut(s)	563
AciI	CCGC	3 cut(s)	208, 561, 563
AclWI	GGATC	2 cut(s)	46, 415
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	4 cut(s)	136, 340, 357, 536
AfaI	GTAC	3 cut(s)	219, 472, 594
AgeI	ACCGGT	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	362, 541, 670
AjiI	CACGTC	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	2 cut(s)	420, 440
AluI	AGCT	2 cut(s)	420, 440
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	46, 415
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	4 cut(s)	136, 340, 357, 536
AsiGI	ACCGGT	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	73, 119, 481
BceAI	ACGGC	2 cut(s)	136, 588
BcgI	CGANNNNNNTGC	4 cut(s)	422, 432, 456, 466
BciT130I	CCWGG	1 cut(s)	315
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	3 cut(s)	441, 561, 564
BlsI	GCNGC	3 cut(s)	442, 562, 565
Bme1390I	CCNGG	2 cut(s)	172, 315
Bme18I	GGWCC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	172, 315
BpmI	CTGGAG	2 cut(s)	222, 367
BpuMI	CCSGG	1 cut(s)	172
BsaJI	CCNNGG	4 cut(s)	71, 118, 561, 579
BsaWI	WCCGGW	2 cut(s)	189, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bse118I	RCCGGY	2 cut(s)	183, 617
Bse1I	ACTGG	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	4 cut(s)	71, 118, 561, 579
BseGI	GGATG	2 cut(s)	388, 646
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	2 cut(s)	27, 30
BseX3I	CGGCCG	1 cut(s)	558
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	560
BshTI	ACCGGT	1 cut(s)	617
BsiEI	CGRYCG	1 cut(s)	561
BsiSI	CCGG	4 cut(s)	171, 184, 190, 618
BsiWI	CGTACG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	560
Bsp1407I	TGTACA	1 cut(s)	470
Bsp143I	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	3 cut(s)	208, 561, 563
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	46, 415
BspQI	GCTCTTC	1 cut(s)	237
BsrFI	RCCGGY	2 cut(s)	183, 617
BsrGI	TGTACA	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	2 cut(s)	183, 617
BssECI	CCNNGG	4 cut(s)	71, 118, 561, 579
BssMI	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	580, 604
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	185, 445
BstDEI	CTNAG	2 cut(s)	273, 421
BstDSI	CCRYGG	4 cut(s)	71, 118, 561, 579
BstF5I	GGATG	2 cut(s)	388, 646
BstFNI	CGCG	1 cut(s)	563
BstKTI	GATC	8 cut(s)	41, 91, 336, 410, 429, 436, 481, 613
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 193, 453, 572
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	170, 313
BstSFI	CTRYAG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	88, 407
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	2 cut(s)	88, 407
BstZI	CGGCCG	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	560
BtgI	CCRYGG	4 cut(s)	71, 118, 561, 579
BtgZI	GCGATG	2 cut(s)	138, 500
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	388, 646
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	185, 445
Cfr10I	RCCGGY	2 cut(s)	183, 617
Cfr13I	GGNCC	1 cut(s)	68
Cfr42I	CCGCGG	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	218, 471, 593
CspAI	ACCGGT	1 cut(s)	617
CviAII	CATG	4 cut(s)	72, 259, 269, 637
CviJI	RGCY	6 cut(s)	187, 196, 420, 440, 456, 560
CviKI_1	RGCY	6 cut(s)	187, 196, 420, 440, 456, 560
CviQI	GTAC	3 cut(s)	218, 471, 593
DdeI	CTNAG	2 cut(s)	273, 421
DpnI	GATC	8 cut(s)	40, 90, 335, 409, 428, 435, 480, 612
DpnII	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
EaeI	YGGCCR	1 cut(s)	558
EagI	CGGCCG	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	68
Eco52I	CGGCCG	1 cut(s)	558
EcoRI	GAATTC	3 cut(s)	136, 357, 536
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	4 cut(s)	75, 262, 272, 640
FalI	AAGNNNNNCTT	4 cut(s)	75, 107, 234, 266
FatI	CATG	4 cut(s)	71, 258, 268, 636
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	441, 561, 564
FokI	GGATG	2 cut(s)	395, 653
Fsp4HI	GCNGC	3 cut(s)	441, 561, 564
GluI	GCNGC	3 cut(s)	441, 561, 564
GsuI	CTGGAG	2 cut(s)	222, 367
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	4 cut(s)	171, 184, 190, 618
Hin1II	CATG	4 cut(s)	75, 262, 272, 640
HpaII	CCGG	4 cut(s)	171, 184, 190, 618
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	382, 424
Hpy188III	TCNNGA	3 cut(s)	36, 239, 346
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	3 cut(s)	218, 225, 454
HpyCH4III	ACNGT	2 cut(s)	580, 604
HpyCH4IV	ACGT	2 cut(s)	216, 449
HpyCH4V	TGCA	3 cut(s)	155, 443, 661
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 193, 453, 572
HpyF3I	CTNAG	2 cut(s)	273, 421
HpySE526I	ACGT	2 cut(s)	216, 449
Hsp92II	CATG	4 cut(s)	75, 262, 272, 640
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	564
Kzo9I	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	427
MaeII	ACGT	2 cut(s)	216, 449
MaeIII	GTNAC	3 cut(s)	385, 548, 568
MalI	GATC	8 cut(s)	40, 90, 335, 409, 428, 435, 480, 612
MboI	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
MboII	GAAGA	5 cut(s)	95, 98, 254, 302, 330
MflI	RGATCY	2 cut(s)	88, 407
MluCI	AATT	5 cut(s)	136, 340, 357, 536, 676
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	5, 8, 11, 23, 342
Mph1103I	ATGCAT	1 cut(s)	663
MroNI	GCCGGC	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	4 cut(s)	171, 184, 190, 618
MspR9I	CCNGG	2 cut(s)	172, 315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	152, 193, 453, 572
NaeI	GCCGGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	4 cut(s)	75, 262, 272, 640
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	568
NsiI	ATGCAT	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	185
Pfl23II	CGTACG	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	617
PkrI	GCNGC	3 cut(s)	442, 562, 565
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspLI	CGTACG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	68
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	88, 407
RsaI	GTAC	3 cut(s)	219, 472, 594
RsaNI	GTAC	3 cut(s)	218, 471, 593
RseI	CAYNNNNRTG	1 cut(s)	123
SacII	CCGCGG	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	237
SatI	GCNGC	3 cut(s)	441, 561, 564
Sau3AI	GATC	8 cut(s)	38, 88, 333, 407, 426, 433, 478, 610
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	172, 315
SetI	ASST	7 cut(s)	34, 160, 219, 290, 422, 442, 452
SfcI	CTRYAG	1 cut(s)	153
Sfr303I	CCGCGG	1 cut(s)	564
SgrBI	CCGCGG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	5 cut(s)	136, 340, 357, 536, 676
SsiI	CCGC	3 cut(s)	208, 561, 563
StyD4I	CCNGG	2 cut(s)	170, 313
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	580, 604
TaiI	ACGT	2 cut(s)	219, 452
TaqI	TCGA	2 cut(s)	293, 452
TasI	AATT	5 cut(s)	136, 340, 357, 536, 676
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	2 cut(s)	563, 566
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	338, 391
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	4 cut(s)	136, 340, 357, 536
Zsp2I	ATGCAT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.