Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Reverse (-)

16138544 .. 16141134

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGAAAAGAGAAAGTAGTGGTGGGTCTGGATCAGGAGATGCAGAGGTGAGAAAAGGGCCATGGACGATGGAAGAAGATTTGATTCTCATCAATTATATCGCCAATCATGGTGAAGGTGTTTGGAACTCTCTCGCCAAATCTGCAGGACTAAAACGCACCGGGAAAAGTTGCCGGCTCCGGTGGCTGAACTACCTCCGACCTGATGTGCGACGGGGAAATATCACACCAGAAGAACAGCTCACCATCATGGAACTTCATGCAAAATGGGGAAATAGGTGGTCAAAAATTGCAAAGCATTTACCAGGAAGAACCGACAATGAGATAAAGAATTTTTGGAGGACTAAGATCCAGAAATACATCATCAAGAGCGGAGAAACGACGACCGTTGGATCACAAAGCTCCGAGTTTATAAACCATCATGCGACAACGAGCCATGTCATGAATGATACTCAAGAAACCATGGATATGTATTCTCCAACGACGTCGTATCAACATGCCAGCAATATTAATCAGCAGCTTAATTATGGTAATTATGTGCCTGAATCCGGTTCGATCATGATGCCATTATCTGTTGATCAATCCGAACAAAACTATTGGAGCGTCGATGATCTTTGGCCCATGAATATATATAATGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

214

Amino Acids

24.46

Weight (kDa)

6.66

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	27 - 70	3.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	31 - 73	2.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AatII	GACGTC	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	372
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	3 cut(s)	40, 343, 400
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	241, 402, 520
AluI	AGCT	3 cut(s)	241, 402, 520
AlwI	GGATC	3 cut(s)	40, 343, 400
AoxI	GGCC	2 cut(s)	59, 617
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	1 cut(s)	331
AseI	ATTAAT	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	59, 618
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	61, 125, 235
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	3 cut(s)	64, 254, 426
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	2 cut(s)	163, 306
BmgT120I	GGNCC	2 cut(s)	59, 618
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	163, 306
BmsI	GCATC	2 cut(s)	31, 552
BpuEI	CTTGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	62, 462
BsaWI	WCCGGW	2 cut(s)	180, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse118I	RCCGGY	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	62, 462
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	61, 619
BsiEI	CGRYCG	1 cut(s)	387
BsiSI	CCGG	4 cut(s)	162, 175, 181, 549
BslI	CCNNNNNNNGG	1 cut(s)	548
BsnI	GGCC	2 cut(s)	61, 619
Bsp143I	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
Bsp19I	CCATGG	2 cut(s)	62, 462
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	61, 619
BspHI	TCATGA	2 cut(s)	441, 558
BspLI	GGNNCC	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	3 cut(s)	40, 343, 400
BsrBI	CCGCTC	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	62, 462
BssMI	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
BssNI	GRCGYC	1 cut(s)	485
BssT1I	CCWWGG	2 cut(s)	62, 462
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	176, 502
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	2 cut(s)	62, 462
BstKTI	GATC	6 cut(s)	35, 351, 395, 558, 580, 613
BstMBI	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 184
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	161, 304
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	61, 619
BtgI	CCRYGG	2 cut(s)	62, 462
Cac8I	GCNNGC	2 cut(s)	176, 502
CciI	TCATGA	2 cut(s)	441, 558
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	59, 618
CseI	GACGC	1 cut(s)	592
CviJI	RGCY	8 cut(s)	61, 178, 187, 241, 402, 435, 520, 619
CviKI_1	RGCY	8 cut(s)	61, 178, 187, 241, 402, 435, 520, 619
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	6 cut(s)	34, 350, 394, 557, 579, 612
DpnII	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
Eco130I	CCWWGG	2 cut(s)	62, 462
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	62, 462
ErhI	CCWWGG	2 cut(s)	62, 462
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	518
Fsp4HI	GCNGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	61, 619
HapII	CCGG	4 cut(s)	162, 175, 181, 549
HgaI	GACGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	485
HinfI	GANTC	2 cut(s)	85, 545
HpaII	CCGG	4 cut(s)	162, 175, 181, 549
HphI	GGTGA	3 cut(s)	61, 125, 235
Hpy188I	TCNGA	3 cut(s)	200, 406, 586
Hpy188III	TCNNGA	7 cut(s)	30, 36, 352, 367, 442, 455, 559
Hpy99I	CGWCG	5 cut(s)	216, 385, 487, 490, 608
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	4 cut(s)	44, 146, 263, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 184
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	485
Hsp92I	GRCGYC	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
LmnI	GCTCC	3 cut(s)	183, 407, 600
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	31, 552
MaeII	ACGT	1 cut(s)	485
MalI	GATC	6 cut(s)	34, 350, 394, 557, 579, 612
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
MboII	GAAGA	4 cut(s)	86, 89, 245, 321
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	6 cut(s)	94, 288, 331, 523, 532, 640
MmeI	TCCRAC	3 cut(s)	223, 370, 503
MnlI	CCTC	3 cut(s)	40, 206, 333
MroNI	GCCGGC	1 cut(s)	174
MseI	TTAA	3 cut(s)	510, 522, 643
MslI	CAYNNNNRTG	2 cut(s)	248, 467
MspI	CCGG	4 cut(s)	162, 175, 181, 549
MspR9I	CCNGG	2 cut(s)	163, 306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	143, 184
NaeI	GCCGGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	2 cut(s)	62, 462
NdeII	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
NgoMIV	GCCGGC	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	2 cut(s)	441, 558
PdiI	GCCGGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	85, 545
PkrI	GCNGC	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	59, 618
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	248, 467
SaqAI	TTAA	3 cut(s)	510, 522, 643
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	6 cut(s)	32, 348, 392, 555, 577, 610
Sau96I	GGNCC	2 cut(s)	59, 618
ScrFI	CCNGG	2 cut(s)	163, 306
SetI	ASST	9 cut(s)	51, 121, 198, 205, 243, 281, 404, 488, 522
SfaNI	GCATC	2 cut(s)	31, 552
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	248, 467
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
Sse9I	AATT	6 cut(s)	94, 288, 331, 523, 532, 640
SsiI	CCGC	1 cut(s)	372
SspI	AATATT	1 cut(s)	508
StyD4I	CCNGG	2 cut(s)	161, 304
StyI	CCWWGG	2 cut(s)	62, 462
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	554, 606
TasI	AATT	6 cut(s)	94, 288, 331, 523, 532, 640
TfiI	GAWTC	2 cut(s)	85, 545
Tru1I	TTAA	3 cut(s)	510, 522, 643
Tru9I	TTAA	3 cut(s)	510, 522, 643
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	3 cut(s)	248, 458, 638
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	500
ZraI	GACGTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.