Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Reverse (-)

25903599 .. 25907493

Gene Structure 3895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G286800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATAAAAAGCCGTGCAATAGTTCATCCCAGGATGTTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGATTTGATTCTGATCAACTATATTGCAAATCACGGTGAAGGTGTATGGAACTCCCTAGCCAAAGCTGCTGGTCTCAAACGTACTGGGAAGAGTTGCCGGCTCCGGTGGCTAAATTATCTGCGGCCTGATGTTAGGAGAGGCAATATTACACCAGAGGAACAACTTTTGATTATGGAACTGCATGCCAAGTGGGGAAACAGGTGGTCTAAAATCGCAAAACATCTGCCAGGACGGACCGATAACGAAATCAAGAACTATTGGAGGACTAGAATTCAAAAGCACATTAAGCAAGCAGAGAATAATATTACACCTGGACAAATCTCCGAGGTGAATGATCAAGCAAGCACAAGTCAGGTGTCGATCTCCAGCGCTGCTGTGGACACAATGGCAATCACCCACGCCGCACCGGCTAATTACCCACCAAATATGGATGCTTATCCTTCTTCTTTACCTGCTGATCACTCCCATGAAGGCTACTGGAGCATTGAGGATCTCTGGTCTATGCAGTTACTAAATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

199

Amino Acids

22.46

Weight (kDa)

7.06

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AciI	CCGC	2 cut(s)	193, 474
AclWI	GGATC	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	342
AfaI	GTAC	1 cut(s)	154
AfeI	AGCGCT	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	41, 347
AjnI	CCWGG	3 cut(s)	30, 298, 382
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	570
Aor51HI	AGCGCT	1 cut(s)	442
AoxI	GGCC	2 cut(s)	53, 194
ApeKI	GCWGC	2 cut(s)	137, 443
ApoI	RAATTY	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	3 cut(s)	53, 60, 306
AsuHPI	GGTGA	3 cut(s)	119, 412, 457
AvaII	GGWCC	2 cut(s)	60, 306
BbvI	GCAGC	2 cut(s)	124, 430
BciT130I	CCWGG	3 cut(s)	32, 300, 384
BclI	TGATCA	3 cut(s)	84, 406, 529
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	128, 339
BfoI	RGCGCY	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	532
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	4 cut(s)	138, 194, 444, 474
BlsI	GCNGC	4 cut(s)	139, 195, 445, 475
Bme1390I	CCNGG	3 cut(s)	32, 300, 384
Bme18I	GGWCC	2 cut(s)	60, 306
BmgT120I	GGNCC	3 cut(s)	53, 60, 306
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	32, 300, 384
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	421, 571
BsaBI	GATNNNNATC	2 cut(s)	83, 507
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	30, 56, 63, 396
BsaWI	WCCGGW	1 cut(s)	174
Bse118I	RCCGGY	2 cut(s)	168, 478
Bse1I	ACTGG	2 cut(s)	160, 554
Bse8I	GATNNNNATC	2 cut(s)	83, 507
BseBI	CCWGG	3 cut(s)	32, 300, 384
BseDI	CCNNGG	4 cut(s)	30, 56, 63, 396
BseGI	GGATG	3 cut(s)	26, 40, 508
BseJI	GATNNNNATC	2 cut(s)	83, 507
BseNI	ACTGG	2 cut(s)	160, 554
BseXI	GCAGC	2 cut(s)	124, 430
BshFI	GGCC	2 cut(s)	55, 196
BsiSI	CCGG	3 cut(s)	169, 175, 479
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	55, 196
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	84, 406, 432, 529, 562
Bsp19I	CCATGG	2 cut(s)	56, 63
BspACI	CCGC	2 cut(s)	193, 474
BspANI	GGCC	2 cut(s)	55, 196
BspLI	GGNNCC	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	168, 478
BsrI	ACTGG	2 cut(s)	160, 554
BssAI	RCCGGY	2 cut(s)	168, 478
BssECI	CCNNGG	4 cut(s)	30, 56, 63, 396
BssMI	GATC	5 cut(s)	84, 406, 432, 529, 562
BssT1I	CCWWGG	2 cut(s)	56, 63
Bst2UI	CCWGG	3 cut(s)	32, 300, 384
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	4 cut(s)	170, 255, 363, 415
BstDSI	CCRYGG	2 cut(s)	56, 63
BstF5I	GGATG	3 cut(s)	26, 40, 508
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	5 cut(s)	87, 409, 435, 532, 565
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	5 cut(s)	84, 406, 432, 529, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 178, 358, 479, 552
BstNI	CCWGG	3 cut(s)	32, 300, 384
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	30, 298, 382
BstV1I	GCAGC	2 cut(s)	124, 430
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	55, 196
BtgI	CCRYGG	2 cut(s)	56, 63
BtsCI	GGATG	3 cut(s)	26, 40, 508
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	4 cut(s)	170, 255, 363, 415
CfoI	GCGC	1 cut(s)	443
Cfr10I	RCCGGY	2 cut(s)	168, 478
Cfr13I	GGNCC	3 cut(s)	53, 60, 306
CpoI	CGGWCCG	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	153
CspI	CGGWCCG	1 cut(s)	306
CviAII	CATG	4 cut(s)	57, 64, 254, 539
CviJI	RGCY	9 cut(s)	13, 55, 131, 137, 172, 181, 196, 482, 546
CviKI_1	RGCY	9 cut(s)	13, 55, 131, 137, 172, 181, 196, 482, 546
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	5 cut(s)	86, 408, 434, 531, 564
DpnII	GATC	5 cut(s)	84, 406, 432, 529, 562
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	56, 63
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	60, 306
Eco47III	AGCGCT	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	30, 298, 382
EcoT14I	CCWWGG	2 cut(s)	56, 63
ErhI	CCWWGG	2 cut(s)	56, 63
FaeI	CATG	4 cut(s)	60, 67, 257, 542
FaiI	YATR	9 cut(s)	58, 65, 93, 118, 245, 255, 500, 540, 575
FatI	CATG	4 cut(s)	56, 63, 253, 538
FbaI	TGATCA	3 cut(s)	84, 406, 529
Fnu4HI	GCNGC	4 cut(s)	138, 194, 444, 474
FokI	GGATG	3 cut(s)	13, 47, 515
Fsp4HI	GCNGC	4 cut(s)	138, 194, 444, 474
FspBI	CTAG	2 cut(s)	128, 339
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	4 cut(s)	138, 194, 444, 474
GsuI	CTGGAG	2 cut(s)	421, 571
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	55, 196
HapII	CCGG	3 cut(s)	169, 175, 479
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	4 cut(s)	60, 67, 257, 542
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	169, 175, 479
HphI	GGTGA	3 cut(s)	119, 412, 457
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	84, 397
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	104, 522, 536
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	18, 98, 253, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 178, 358, 479, 552
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	60, 67, 257, 542
HspAI	GCGC	1 cut(s)	441
KroI	GCCGGC	1 cut(s)	168
KroNI	GCCGGC	1 cut(s)	170
Ksp22I	TGATCA	3 cut(s)	84, 406, 529
Kzo9I	GATC	5 cut(s)	84, 406, 432, 529, 562
LmnI	GCTCC	2 cut(s)	177, 552
Lsp1109I	GCAGC	2 cut(s)	124, 430
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	128, 339
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	5 cut(s)	86, 408, 434, 531, 564
MboI	GATC	5 cut(s)	84, 406, 432, 529, 562
MboII	GAAGA	4 cut(s)	80, 83, 172, 507
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	3 cut(s)	184, 342, 484
MnlI	CCTC	5 cut(s)	203, 220, 327, 391, 553
MroNI	GCCGGC	1 cut(s)	168
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	3 cut(s)	169, 175, 479
MspR9I	CCNGG	3 cut(s)	32, 300, 384
MvaI	CCWGG	3 cut(s)	32, 300, 384
MwoI	GCNNNNNNNGC	5 cut(s)	137, 178, 358, 479, 552
NaeI	GCCGGC	1 cut(s)	170
NcoI	CCATGG	2 cut(s)	56, 63
NdeII	GATC	5 cut(s)	84, 406, 432, 529, 562
NgoMIV	GCCGGC	1 cut(s)	168
NlaIII	CATG	4 cut(s)	60, 67, 257, 542
NlaIV	GGNNCC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PdiI	GCCGGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	139, 195, 445, 475
Psp6I	CCWGG	3 cut(s)	30, 298, 382
PspGI	CCWGG	3 cut(s)	30, 298, 382
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	3 cut(s)	53, 60, 306
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	537
Rsr2I	CGGWCCG	1 cut(s)	306
RsrII	CGGWCCG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	138, 194, 444, 474
Sau3AI	GATC	5 cut(s)	84, 406, 432, 529, 562
Sau96I	GGNCC	3 cut(s)	53, 60, 306
ScrFI	CCNGG	3 cut(s)	32, 300, 384
SetI	ASST	8 cut(s)	115, 139, 154, 275, 385, 402, 429, 526
SfaNI	GCATC	1 cut(s)	493
SinI	GGWCC	2 cut(s)	60, 306
SmiMI	CAYNNNNRTG	1 cut(s)	537
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	184, 342, 484
SsiI	CCGC	2 cut(s)	193, 474
SspI	AATATT	2 cut(s)	217, 376
SspMI	CTAG	2 cut(s)	128, 339
StyD4I	CCNGG	3 cut(s)	30, 298, 382
StyI	CCWWGG	2 cut(s)	56, 63
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	431
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	184, 342, 484
TauI	GCSGC	2 cut(s)	196, 476
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseI	GCWGC	2 cut(s)	137, 443
TspDTI	ATGAA	2 cut(s)	15, 555
TspGWI	ACGGA	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	60, 306
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	128, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.