Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Reverse (-)

86642981 .. 86647578

Gene Structure 4598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG647300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATAAAAAACCGTGCAATTCATCATCCCAGGATGCTGAAGTGAGAAAAGGGCCGTGGACCATGGAAGAAGATTTGATTCTGATCAACTATATTGCAAACCATGGTGAAGGTGTATGGAACTCCCTTGCCAAATCTGCCGGTTTGAAACGTACTGGGAAGAGTTGCAGACTCCGATGGCTAAACTATCTCCGACCGGACGTTAGGAGAGGCAATATCACACCAGAGGAACAGCTCTTGATCATGGAACTGCATGCCAAGTGGGGAAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

91

Amino Acids

10.49

Weight (kDa)

9.34

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	1.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 78	4.6e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AoxI	GGCC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	53, 60
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	60
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	2 cut(s)	84, 240
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	53, 60
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	30, 56, 63, 103
BsaWI	WCCGGW	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	30, 56, 63, 103
BseGI	GGATG	2 cut(s)	26, 40
BseJI	GATNNNNATC	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	141, 197
BsnI	GGCC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	84, 240
Bsp19I	CCATGG	2 cut(s)	63, 103
BspANI	GGCC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	4 cut(s)	30, 56, 63, 103
BssMI	GATC	2 cut(s)	84, 240
BssT1I	CCWWGG	2 cut(s)	63, 103
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	255
BstDSI	CCRYGG	3 cut(s)	56, 63, 103
BstF5I	GGATG	2 cut(s)	26, 40
BstKTI	GATC	2 cut(s)	87, 243
BstMBI	GATC	2 cut(s)	84, 240
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	3 cut(s)	56, 63, 103
BtsCI	GGATG	2 cut(s)	26, 40
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	53, 60
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	64, 104, 244, 254
CviJI	RGCY	3 cut(s)	55, 181, 235
CviKI_1	RGCY	3 cut(s)	55, 181, 235
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	2 cut(s)	86, 242
DpnII	GATC	2 cut(s)	84, 240
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	63, 103
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	63, 103
ErhI	CCWWGG	2 cut(s)	63, 103
FaeI	CATG	4 cut(s)	67, 107, 247, 257
FaiI	YATR	6 cut(s)	65, 93, 105, 118, 245, 255
FatI	CATG	4 cut(s)	63, 103, 243, 253
FbaI	TGATCA	2 cut(s)	84, 240
FokI	GGATG	2 cut(s)	13, 47
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	2 cut(s)	141, 197
Hin1II	CATG	4 cut(s)	67, 107, 247, 257
HinfI	GANTC	2 cut(s)	79, 171
HpaII	CCGG	2 cut(s)	141, 197
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	84, 176, 194
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	2 cut(s)	151, 201
HpyCH4V	TGCA	4 cut(s)	18, 98, 168, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	151, 201
Hsp92II	CATG	4 cut(s)	67, 107, 247, 257
Ksp22I	TGATCA	2 cut(s)	84, 240
Kzo9I	GATC	2 cut(s)	84, 240
LpnPI	CCDG	7 cut(s)	17, 44, 141, 154, 210, 237, 256
LweI	GCATC	1 cut(s)	25
MaeII	ACGT	2 cut(s)	151, 201
MalI	GATC	2 cut(s)	86, 242
MboI	GATC	2 cut(s)	84, 240
MboII	GAAGA	3 cut(s)	80, 83, 172
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	2 cut(s)	203, 220
MspI	CCGG	2 cut(s)	141, 197
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	137
NcoI	CCATGG	2 cut(s)	63, 103
NdeII	GATC	2 cut(s)	84, 240
NlaIII	CATG	4 cut(s)	67, 107, 247, 257
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	53, 60
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	84, 240
Sau96I	GGNCC	2 cut(s)	53, 60
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	5 cut(s)	115, 154, 204, 237, 275
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	60
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	63, 103
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	2 cut(s)	154, 204
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	60
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.