Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000467.1

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

48116 .. 53086

Gene Structure 4971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000467.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggaagaagatttgattctgataaactatattgcaaaccatggtgaaggtgtatggaactcccttgccaaatctgccggtttgaaacgtactgggaagagttgcagactccgatggctaaactatctccgaccggacgttaggagaggcaatatcacaccagaggaacagctcttgatcatggaactgcatgccaagtggggaaacaggtggtcgaaaatcgcaaagcatctgccaggacggaccgacaatgaaatcaagaactactggagaacccgaatccaaaagcacatcaagcaaggtgatcagagcaattcacagggacaaagctcagaagggactgcagatcaggcaagcacgagccaaatgggatcgagcagcactactggtctcgacccaatggaaaccacctaccctttatgccccacgacggcgtcgtacccagtaactctggttcagcctcctgatcatcctaacgttgtaccccctccggattccaatcaagagagttactggagcatggaggatctctggtctatgcagttactaaatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

185

Amino Acids

20.99

Weight (kDa)

6.21

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	490
AclI	AACGTT	1 cut(s)	477
AclWI	GGATC	2 cut(s)	379, 534
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	3 cut(s)	91, 440, 483
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	172, 330
AluI	AGCT	2 cut(s)	172, 330
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	379, 534
Aor13HI	TCCGGA	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	56, 314
AvaII	GGWCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	3 cut(s)	177, 304, 466
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	2 cut(s)	102, 437
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	2 cut(s)	102, 437
BpmI	CTGGAG	2 cut(s)	289, 535
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	2 cut(s)	133, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	5 cut(s)	97, 272, 391, 443, 518
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	5 cut(s)	97, 272, 391, 443, 518
BseXI	GCAGC	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	78, 134, 491
BslFI	GGGAC	2 cut(s)	336, 352
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	336, 352
Bso31I	GGTCTC	1 cut(s)	395
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
Bsp19I	CCATGG	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	344
BspEI	TCCGGA	1 cut(s)	490
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	379, 534
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	5 cut(s)	97, 272, 391, 443, 518
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
BssNI	GRCGYC	1 cut(s)	434
BssSI	CACGAG	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	192, 355
BstDEI	CTNAG	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	6 cut(s)	180, 307, 349, 374, 469, 529
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 295, 350
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	192, 355
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	243
CpoI	CGGWCCG	1 cut(s)	243
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	90, 439, 482
CspI	CGGWCCG	1 cut(s)	243
CviAII	CATG	4 cut(s)	41, 181, 191, 520
CviJI	RGCY	5 cut(s)	118, 172, 330, 363, 460
CviKI_1	RGCY	5 cut(s)	118, 172, 330, 363, 460
CviQI	GTAC	3 cut(s)	90, 439, 482
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	6 cut(s)	179, 306, 348, 373, 468, 528
DpnII	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	44, 184, 194, 523
FaiI	YATR	8 cut(s)	30, 42, 55, 182, 192, 421, 521, 539
FaqI	GGGAC	2 cut(s)	336, 352
FatI	CATG	4 cut(s)	40, 180, 190, 519
FbaI	TGATCA	3 cut(s)	177, 304, 466
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
GsuI	CTGGAG	2 cut(s)	289, 535
HapII	CCGG	3 cut(s)	78, 134, 491
HgaI	GACGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	44, 184, 194, 523
HinfI	GANTC	4 cut(s)	16, 108, 279, 494
HpaII	CCGG	3 cut(s)	78, 134, 491
HphI	GGTGA	2 cut(s)	56, 314
Hpy188I	TCNGA	5 cut(s)	21, 113, 131, 309, 334
Hpy188III	TCNNGA	6 cut(s)	175, 259, 392, 464, 491, 503
Hpy99I	CGWCG	2 cut(s)	433, 439
HpyAV	CCTTC	2 cut(s)	41, 329
HpyCH4IV	ACGT	3 cut(s)	88, 138, 477
HpyCH4V	TGCA	5 cut(s)	35, 105, 190, 344, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 295, 350
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	3 cut(s)	88, 138, 477
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	44, 184, 194, 523
Kpn2I	TCCGGA	1 cut(s)	490
Ksp22I	TGATCA	3 cut(s)	177, 304, 466
Kzo9I	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	3 cut(s)	88, 138, 477
MaeIII	GTNAC	3 cut(s)	445, 509, 543
MalI	GATC	6 cut(s)	179, 306, 348, 373, 468, 528
MboI	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
MboII	GAAGA	3 cut(s)	17, 20, 109
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	140, 157, 471, 498, 517
MroI	TCCGGA	1 cut(s)	490
MspI	CCGG	3 cut(s)	78, 134, 491
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	74, 295, 350
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
NlaIII	CATG	4 cut(s)	44, 184, 194, 523
NspI	RCATGY	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PfeI	GAWTC	3 cut(s)	16, 279, 494
PflFI	GACNNNGTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	243
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	433
RsaI	GTAC	3 cut(s)	91, 440, 483
RsaNI	GTAC	3 cut(s)	90, 439, 482
Rsr2I	CGGWCCG	1 cut(s)	243
RsrII	CGGWCCG	1 cut(s)	243
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	6 cut(s)	177, 304, 346, 371, 466, 526
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	9 cut(s)	52, 91, 141, 174, 212, 304, 332, 413, 480
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	243
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	40
TaiI	ACGT	3 cut(s)	91, 141, 480
TaqI	TCGA	3 cut(s)	215, 374, 393
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	3 cut(s)	16, 279, 494
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.