Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

1871688 .. 1872188

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1030700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGTGGTCGAAAATCGCAAAACATCTACCGGGAAGGACTGATAACGAAATCAAGAACTATTGGAGGACTAGAATTCAAAAGCACATTAAGCAAGCTGAGAATATTACACCAGGACAAAGCTCTGAGGTCAATGATCAAGCAAGCACAAGTCAAGTGTCAATCTCTAACACTGTGGACACAATGGATATTTCCCACTCCGCACCAACACACCAAGCAAATATGGATGCTTATCCTCCTCCTTTGCCTGCTGATCAATCTAATGATAACTACTGGAGCATGGAGGATCTCTGGTCTATGCAACTGCTAAATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

5.19

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 24	1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	98, 123
AluI	AGCT	2 cut(s)	98, 123
AlwI	GGATC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	2 cut(s)	136, 253
BcnI	CCSGG	1 cut(s)	33
BfaI	CTAG	1 cut(s)	72
Bme1390I	CCNGG	2 cut(s)	33, 114
BmrFI	CCNGG	2 cut(s)	33, 114
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	90, 117
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	136, 253, 286
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	91, 118
BspPI	GGATC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	136, 253, 286
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	96, 145, 249
BstDEI	CTNAG	2 cut(s)	99, 126
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	3 cut(s)	139, 256, 289
BstMBI	GATC	3 cut(s)	136, 253, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	31, 112
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	96, 145, 249
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	2 cut(s)	98, 123
CviKI_1	RGCY	2 cut(s)	98, 123
DdeI	CTNAG	2 cut(s)	99, 126
DpnI	GATC	3 cut(s)	138, 255, 288
DpnII	GATC	3 cut(s)	136, 253, 286
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	283
FaiI	YATR	3 cut(s)	224, 281, 299
FatI	CATG	1 cut(s)	279
FbaI	TGATCA	2 cut(s)	136, 253
FokI	GGATG	1 cut(s)	239
FspBI	CTAG	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	295
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	283
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	99, 126
Hsp92II	CATG	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	136, 253
Kzo9I	GATC	3 cut(s)	136, 253, 286
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	45, 99, 126, 259, 261, 277
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	72
MalI	GATC	3 cut(s)	138, 255, 288
MboI	GATC	3 cut(s)	136, 253, 286
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	5 cut(s)	60, 121, 246, 249, 277
MseI	TTAA	1 cut(s)	90
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	33, 114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	136, 253, 286
NlaIII	CATG	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	136, 253, 286
ScrFI	CCNGG	2 cut(s)	33, 114
SetI	ASST	3 cut(s)	100, 125, 132
SfaNI	GCATC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	31, 112
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.