Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

2356753 .. 2357446

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1032500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACTTGGAATTTTTACCAATACTTAACTGCAGAGAAGTGGTCGAAAATCGCAAAACATCTACCGGGACGGACCGATAACGAAATCAAGAACTATTGGAGGACTAGAATTCAAAAACATATTAAGCAAGCTGAGAATATAACACCAGGACAAAGCTCTGAGGTGAATGATCAAGCTAGCACAAGTCAAGTGTCCATCTCTAACACTGTGGACACGATGGATATTTCCCACTCCGCACCAACATACCAAGCAAATATGGATGCTTATCCTCCTCCGTTACCTGCTGATCAATCTAATGAAAGCTATTGGAGCATGGAGGATCTCTGGTCTCTGCAATTGCTAAATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

118

Amino Acids

13.48

Weight (kDa)

5.06

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 35	1.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	10, 108
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	131, 156, 176, 303
AluI	AGCT	4 cut(s)	131, 156, 176, 303
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	327
ApoI	RAATTY	2 cut(s)	10, 108
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	72
BccI	CCATC	2 cut(s)	203, 211
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	2 cut(s)	169, 286
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	105, 177
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	66, 147
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	66, 147
BmsI	GCATC	1 cut(s)	250
BmtI	GCTAGC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	123, 150
BseRI	GAGGAG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	81
Bso31I	GGTCTC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	169, 286, 319
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	124, 151
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	333
BssMI	GATC	3 cut(s)	169, 286, 319
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	129, 178
BstDEI	CTNAG	2 cut(s)	132, 159
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	172, 289, 322
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	169, 286, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	64, 145
BstSFI	CTRYAG	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	129, 178
Cfr13I	GGNCC	1 cut(s)	72
CpoI	CGGWCCG	1 cut(s)	72
CspI	CGGWCCG	1 cut(s)	72
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	4 cut(s)	131, 156, 176, 303
CviKI_1	RGCY	4 cut(s)	131, 156, 176, 303
DdeI	CTNAG	2 cut(s)	132, 159
DpnI	GATC	3 cut(s)	171, 288, 321
DpnII	GATC	3 cut(s)	169, 286, 319
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	316
FaiI	YATR	5 cut(s)	120, 140, 244, 257, 314
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	2 cut(s)	169, 286
FokI	GGATG	1 cut(s)	272
FspBI	CTAG	2 cut(s)	105, 177
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	316
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	32, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	2 cut(s)	132, 159
Hsp92II	CATG	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	169, 286
Kzo9I	GATC	3 cut(s)	169, 286, 319
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	5 cut(s)	78, 132, 159, 294, 310
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	105, 177
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	3 cut(s)	171, 288, 321
MboI	GATC	3 cut(s)	169, 286, 319
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	3 cut(s)	10, 108, 335
MnlI	CCTC	5 cut(s)	93, 154, 279, 282, 310
MseI	TTAA	2 cut(s)	26, 123
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	66, 147
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	3 cut(s)	169, 286, 319
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	319
Rsr2I	CGGWCCG	1 cut(s)	72
RsrII	CGGWCCG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	26, 123
Sau3AI	GATC	3 cut(s)	169, 286, 319
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	66, 147
SetI	ASST	6 cut(s)	133, 158, 165, 178, 283, 305
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	3 cut(s)	10, 108, 335
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	105, 177
StyD4I	CCNGG	2 cut(s)	64, 145
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	44
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	3 cut(s)	10, 108, 335
Tru1I	TTAA	2 cut(s)	26, 123
Tru9I	TTAA	2 cut(s)	26, 123
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	85, 264
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	10, 108
XspI	CTAG	2 cut(s)	105, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.