Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Reverse (-)

37825364 .. 37830287

Gene Structure 4924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATAAAAAACCATGCAATTCATCATCCCAGGATGCTGAAGTGAGAAAAGGGCCGTGGACCATGGAAGAGGATTTGATTCTGATAAACTATATTGCAAACCATGGTGAAGGTGTTTGGAACTCCCTTGCCAAATCTGCCGGTTTGAAACGTACTGGGAAGAGTTGCAGACTCCGATGGCTAAACTATCTCCGACCTGACGTTAGGAGAGGCAATATCACTCCGGAGGAACAGCTCTTGATCATGGAACTGCACGCTAAGTGGGGAAACAGGTGGTCGAAAATCGCAAAGCATCTGCCAGGACGGACCGACAATGAAATCAAGAACTACTGGAGAACCCGAATCCAAAAGCACATCAAGCAAGGTGATCAGAGCAATTCACAGGGACAAAGCTCTGATGGAACTGCAGATCAGGCAAGCACAAGCAAAGTGGGATCGAGCAGCACTGTTGGTCTCGACGCCATGGAAACCACCTACCCTCTATGCGCCCCGACGGCGTCGTATCCAGCAACTCTGGTTCAGCCTCCTGCTCATCCTAATGTTCTACCCCCTGGAGATTCAAATCAGGATAATTACTGGAGCATGGAGGATCTCTGGTCTATGCAGTTACTAAATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

23.21

Weight (kDa)

7.73

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	8.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 77	4.7e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 113	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 126	4.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	2 cut(s)	442, 597
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	459, 497
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	148, 561
AjnI	CCWGG	3 cut(s)	30, 298, 550
AluBI	AGCT	2 cut(s)	235, 393
AluI	AGCT	2 cut(s)	235, 393
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	442, 597
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	3 cut(s)	53, 60, 306
AsuHPI	GGTGA	2 cut(s)	119, 377
AvaII	GGWCC	2 cut(s)	60, 306
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	2 cut(s)	171, 392
BceAI	ACGGC	2 cut(s)	40, 510
BciT130I	CCWGG	3 cut(s)	32, 300, 552
BciVI	GTATCC	1 cut(s)	513
BclI	TGATCA	2 cut(s)	240, 367
BcoDI	GTCTC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	513
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
Bme1390I	CCNGG	3 cut(s)	32, 300, 552
Bme18I	GGWCC	2 cut(s)	60, 306
BmgT120I	GGNCC	3 cut(s)	53, 60, 306
BmrFI	CCNGG	3 cut(s)	32, 300, 552
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	25, 301
BmuI	ACTGGG	1 cut(s)	165
BpmI	CTGGAG	3 cut(s)	352, 573, 598
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	2 cut(s)	459, 497
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	6 cut(s)	30, 56, 63, 103, 462, 550
BsaWI	WCCGGW	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	160, 335, 581
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	3 cut(s)	32, 300, 552
BseDI	CCNNGG	6 cut(s)	30, 56, 63, 103, 462, 550
BseGI	GGATG	3 cut(s)	26, 40, 532
BseJI	GATNNNNATC	1 cut(s)	561
BseNI	ACTGG	3 cut(s)	160, 335, 581
BseXI	GCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	141, 224
BslFI	GGGAC	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	240, 367, 409, 434, 589
Bsp19I	CCATGG	3 cut(s)	63, 103, 462
BspANI	GGCC	1 cut(s)	55
BspEI	TCCGGA	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	442, 597
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	160, 335, 581
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	6 cut(s)	30, 56, 63, 103, 462, 550
BssMI	GATC	5 cut(s)	240, 367, 409, 434, 589
BssNI	GRCGYC	2 cut(s)	459, 497
BssT1I	CCWWGG	3 cut(s)	63, 103, 462
Bst2UI	CCWGG	3 cut(s)	32, 300, 552
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	63, 155
BstACI	GRCGYC	2 cut(s)	459, 497
BstC8I	GCNNGC	2 cut(s)	255, 418
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	4 cut(s)	56, 63, 103, 462
BstF5I	GGATG	3 cut(s)	26, 40, 532
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	5 cut(s)	243, 370, 412, 437, 592
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	5 cut(s)	240, 367, 409, 434, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 358, 413, 494
BstNI	CCWGG	3 cut(s)	32, 300, 552
BstSCI	CCNGG	3 cut(s)	30, 298, 550
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	4 cut(s)	56, 63, 103, 462
BtsCI	GGATG	3 cut(s)	26, 40, 532
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	255, 418
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	53, 60, 306
CpoI	CGGWCCG	1 cut(s)	306
CseI	GACGC	2 cut(s)	467, 486
Csp6I	GTAC	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CspI	CGGWCCG	1 cut(s)	306
CviAII	CATG	6 cut(s)	15, 64, 104, 244, 463, 583
CviJI	RGCY	5 cut(s)	55, 181, 235, 393, 523
CviKI_1	RGCY	5 cut(s)	55, 181, 235, 393, 523
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	5 cut(s)	242, 369, 411, 436, 591
DpnII	GATC	5 cut(s)	240, 367, 409, 434, 589
Eam1104I	CTCTTC	2 cut(s)	63, 155
EarI	CTCTTC	2 cut(s)	63, 155
Eco130I	CCWWGG	3 cut(s)	63, 103, 462
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	60, 306
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	30, 298, 550
EcoT14I	CCWWGG	3 cut(s)	63, 103, 462
ErhI	CCWWGG	3 cut(s)	63, 103, 462
FaeI	CATG	6 cut(s)	18, 67, 107, 247, 466, 586
FaiI	YATR	9 cut(s)	16, 65, 93, 105, 245, 464, 484, 584, 602
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	6 cut(s)	14, 63, 103, 243, 462, 582
FbaI	TGATCA	2 cut(s)	240, 367
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	3 cut(s)	13, 47, 519
Fsp4HI	GCNGC	1 cut(s)	442
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	442
GsuI	CTGGAG	3 cut(s)	352, 573, 598
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	2 cut(s)	141, 224
HgaI	GACGC	2 cut(s)	467, 486
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	2 cut(s)	459, 497
Hin1II	CATG	6 cut(s)	18, 67, 107, 247, 466, 586
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	79, 171, 342, 557
HpaII	CCGG	2 cut(s)	141, 224
HphI	GGTGA	2 cut(s)	119, 377
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	5 cut(s)	84, 176, 194, 372, 397
Hpy188III	TCNNGA	5 cut(s)	224, 238, 322, 455, 566
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	3 cut(s)	461, 496, 502
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	2 cut(s)	151, 201
HpyCH4V	TGCA	6 cut(s)	18, 98, 168, 253, 407, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 358, 413, 494
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	151, 201
Hsp92I	GRCGYC	2 cut(s)	459, 497
Hsp92II	CATG	6 cut(s)	18, 67, 107, 247, 466, 586
HspAI	GCGC	1 cut(s)	486
Kpn2I	TCCGGA	1 cut(s)	223
Ksp22I	TGATCA	2 cut(s)	240, 367
Kzo9I	GATC	5 cut(s)	240, 367, 409, 434, 589
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	2 cut(s)	25, 301
MaeII	ACGT	2 cut(s)	151, 201
MaeIII	GTNAC	1 cut(s)	606
MalI	GATC	5 cut(s)	242, 369, 411, 436, 591
MboI	GATC	5 cut(s)	240, 367, 409, 434, 589
MboII	GAAGA	2 cut(s)	80, 172
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	3 cut(s)	19, 376, 571
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	64, 203, 220, 489, 534, 580
MroI	TCCGGA	1 cut(s)	223
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	2 cut(s)	141, 224
MspR9I	CCNGG	3 cut(s)	32, 300, 552
MvaI	CCWGG	3 cut(s)	32, 300, 552
MwoI	GCNNNNNNNGC	4 cut(s)	137, 358, 413, 494
NcoI	CCATGG	3 cut(s)	63, 103, 462
NdeII	GATC	5 cut(s)	240, 367, 409, 434, 589
NlaIII	CATG	6 cut(s)	18, 67, 107, 247, 466, 586
PfeI	GAWTC	3 cut(s)	79, 342, 557
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	443
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	3 cut(s)	30, 298, 550
PspGI	CCWGG	3 cut(s)	30, 298, 550
PspPI	GGNCC	3 cut(s)	53, 60, 306
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	537
Rsr2I	CGGWCCG	1 cut(s)	306
RsrII	CGGWCCG	1 cut(s)	306
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	5 cut(s)	240, 367, 409, 434, 589
Sau96I	GGNCC	3 cut(s)	53, 60, 306
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	32, 300, 552
SetI	ASST	9 cut(s)	115, 154, 199, 204, 237, 275, 367, 395, 476
SfaNI	GCATC	2 cut(s)	25, 301
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	60, 306
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	3 cut(s)	19, 376, 571
StyD4I	CCNGG	3 cut(s)	30, 298, 550
StyI	CCWWGG	3 cut(s)	63, 103, 462
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	2 cut(s)	154, 204
TaqI	TCGA	3 cut(s)	278, 437, 456
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	19, 376, 571
TfiI	GAWTC	3 cut(s)	79, 342, 557
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	12, 330
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	451
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	2 cut(s)	60, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.