Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Reverse (-)

79091744 .. 79096012

Gene Structure 4269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG614200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGATAAAAAACCATGCAATTCATCATCCCAGGATGCTGAAGTGAGAAAAGGGCCGTGGACCATGGAAGAAGATTTGATTCTGATAAACTATATTGCAAACCATGGTGAAGGTGTATGGAACTCCCTTGCCAAATCTGCCGGTTTGAAACGTACTGGGAAGAGTTGCAGACTCCGATGGCTAAACTATCTCCGACCGGACGTTAGGAGAGGCAATATCACACCAGAGGAACAGCTCTTGATCATGGAACTGCATGCCAAGTGGGGAAACAGGTGGTCGAAAATCGCAAAGCATCTGCCAGGACGGACCGACAATGAAATCAAGAACTACTGGAGAACCCGAATCCAAAAGCACATCAAGCAAGGTGATCAGAGCAATTCACAGGGACAAAGCTCAGAAGGGACTGCAGATCAGGCAAGCACGAGCCAAATGGGATCGAGCAGCACTACTGGTCTCGACCCAATGGAAACCACCTACCCTTTATGCCCCACGACGGCGTCGTACCCAGTAACTCTGGTTCAGCCTCCTGATCATCCTAACGTTGTACCCCCTCCGGATTCCAATCAAGAGAATTACTGGAGCATGGAGGATCTCTGGTCTATGCAGTTACTAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

206

Amino Acids

23.37

Weight (kDa)

6.53

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	8.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 77	4.7e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 113	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 126	4.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	553
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	2 cut(s)	442, 597
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	497
AfaI	GTAC	3 cut(s)	154, 503, 546
AfiI	CCNNNNNNNGG	1 cut(s)	493
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	30, 298
AluBI	AGCT	2 cut(s)	235, 393
AluI	AGCT	2 cut(s)	235, 393
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	442, 597
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	53, 60, 306
AsuHPI	GGTGA	2 cut(s)	119, 377
AvaII	GGWCC	2 cut(s)	60, 306
BauI	CACGAG	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	2 cut(s)	40, 510
BciT130I	CCWGG	2 cut(s)	32, 300
BclI	TGATCA	3 cut(s)	240, 367, 529
BcoDI	GTCTC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	32, 300
Bme18I	GGWCC	2 cut(s)	60, 306
BmgT120I	GGNCC	3 cut(s)	53, 60, 306
BmrFI	CCNGG	2 cut(s)	32, 300
BmrI	ACTGGG	2 cut(s)	165, 500
BmsI	GCATC	2 cut(s)	25, 301
BmuI	ACTGGG	2 cut(s)	165, 500
BpmI	CTGGAG	2 cut(s)	352, 598
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	30, 56, 63, 103
BsaWI	WCCGGW	2 cut(s)	196, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	5 cut(s)	160, 335, 454, 506, 581
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	32, 300
BseDI	CCNNGG	4 cut(s)	30, 56, 63, 103
BseGI	GGATG	3 cut(s)	26, 40, 532
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	5 cut(s)	160, 335, 454, 506, 581
BseXI	GCAGC	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	141, 197, 554
BslFI	GGGAC	2 cut(s)	399, 415
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	399, 415
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	553
Bsp143I	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
Bsp19I	CCATGG	2 cut(s)	63, 103
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	407
BspEI	TCCGGA	1 cut(s)	553
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	442, 597
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	5 cut(s)	160, 335, 454, 506, 581
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	4 cut(s)	30, 56, 63, 103
BssMI	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
BssNI	GRCGYC	1 cut(s)	497
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	63, 103
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	2 cut(s)	32, 300
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	255, 418
BstDEI	CTNAG	1 cut(s)	394
BstDSI	CCRYGG	3 cut(s)	56, 63, 103
BstF5I	GGATG	3 cut(s)	26, 40, 532
BstKTI	GATC	6 cut(s)	243, 370, 412, 437, 532, 592
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 358, 413
BstNI	CCWGG	2 cut(s)	32, 300
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	30, 298
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	3 cut(s)	56, 63, 103
BtsCI	GGATG	3 cut(s)	26, 40, 532
Cac8I	GCNNGC	2 cut(s)	255, 418
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	53, 60, 306
CpoI	CGGWCCG	1 cut(s)	306
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	153, 502, 545
CspI	CGGWCCG	1 cut(s)	306
CviAII	CATG	6 cut(s)	15, 64, 104, 244, 254, 583
CviJI	RGCY	6 cut(s)	55, 181, 235, 393, 426, 523
CviKI_1	RGCY	6 cut(s)	55, 181, 235, 393, 426, 523
CviQI	GTAC	3 cut(s)	153, 502, 545
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	6 cut(s)	242, 369, 411, 436, 531, 591
DpnII	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	63, 103
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	60, 306
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	30, 298
EcoT14I	CCWWGG	2 cut(s)	63, 103
ErhI	CCWWGG	2 cut(s)	63, 103
FaeI	CATG	6 cut(s)	18, 67, 107, 247, 257, 586
FaqI	GGGAC	2 cut(s)	399, 415
FatI	CATG	6 cut(s)	14, 63, 103, 243, 253, 582
FbaI	TGATCA	3 cut(s)	240, 367, 529
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	3 cut(s)	13, 47, 519
Fsp4HI	GCNGC	1 cut(s)	442
GluI	GCNGC	1 cut(s)	442
GsuI	CTGGAG	2 cut(s)	352, 598
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	141, 197, 554
HgaI	GACGC	1 cut(s)	486
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	6 cut(s)	18, 67, 107, 247, 257, 586
HinfI	GANTC	4 cut(s)	79, 171, 342, 557
HpaII	CCGG	3 cut(s)	141, 197, 554
HphI	GGTGA	2 cut(s)	119, 377
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	5 cut(s)	84, 176, 194, 372, 397
Hpy188III	TCNNGA	6 cut(s)	238, 322, 455, 527, 554, 566
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	2 cut(s)	496, 502
HpyAV	CCTTC	2 cut(s)	104, 392
HpyCH4IV	ACGT	3 cut(s)	151, 201, 540
HpyCH4V	TGCA	6 cut(s)	18, 98, 168, 253, 407, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 358, 413
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	3 cut(s)	151, 201, 540
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	6 cut(s)	18, 67, 107, 247, 257, 586
Kpn2I	TCCGGA	1 cut(s)	553
Ksp22I	TGATCA	3 cut(s)	240, 367, 529
Kzo9I	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	2 cut(s)	25, 301
MaeII	ACGT	3 cut(s)	151, 201, 540
MaeIII	GTNAC	2 cut(s)	508, 606
MalI	GATC	6 cut(s)	242, 369, 411, 436, 531, 591
MboI	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
MboII	GAAGA	3 cut(s)	80, 83, 172
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	3 cut(s)	19, 376, 571
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	203, 220, 534, 561, 580
MroI	TCCGGA	1 cut(s)	553
MspI	CCGG	3 cut(s)	141, 197, 554
MspR9I	CCNGG	2 cut(s)	32, 300
MvaI	CCWGG	2 cut(s)	32, 300
MwoI	GCNNNNNNNGC	3 cut(s)	137, 358, 413
NcoI	CCATGG	2 cut(s)	63, 103
NdeII	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
NlaIII	CATG	6 cut(s)	18, 67, 107, 247, 257, 586
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	79, 342, 557
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	443
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp1406I	AACGTT	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	30, 298
PspGI	CCWGG	2 cut(s)	30, 298
PspPI	GGNCC	3 cut(s)	53, 60, 306
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	3 cut(s)	154, 503, 546
RsaNI	GTAC	3 cut(s)	153, 502, 545
Rsr2I	CGGWCCG	1 cut(s)	306
RsrII	CGGWCCG	1 cut(s)	306
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	6 cut(s)	240, 367, 409, 434, 529, 589
Sau96I	GGNCC	3 cut(s)	53, 60, 306
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	32, 300
SetI	ASST	9 cut(s)	115, 154, 204, 237, 275, 367, 395, 476, 543
SfaNI	GCATC	2 cut(s)	25, 301
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	60, 306
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	19, 376, 571
StyD4I	CCNGG	2 cut(s)	30, 298
StyI	CCWWGG	2 cut(s)	63, 103
TaiI	ACGT	3 cut(s)	154, 204, 543
TaqI	TCGA	3 cut(s)	278, 437, 456
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	19, 376, 571
TfiI	GAWTC	3 cut(s)	79, 342, 557
TseI	GCWGC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	12, 330
TspGWI	ACGGA	1 cut(s)	319
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	2 cut(s)	60, 306
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.