Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

2353930 .. 2354150

Gene Structure 221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1032300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGATAAAAAACCATGCAATAGTTCATCCCAGGATGTTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGATTTGATTCTCATCAACTATATTGCAAATCATGGTGAAGGTGTATGGAACTCCCTAGCCAAATCTGCTGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

50

Amino Acids

5.43

Weight (kDa)

5.05

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 48	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	53, 60
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	53, 60
BmrFI	CCNGG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	30, 56, 63
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 56, 63
BseGI	GGATG	2 cut(s)	26, 40
BseJI	GATNNNNATC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	55
Bsp19I	CCATGG	2 cut(s)	56, 63
BspANI	GGCC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	30, 56, 63
BssT1I	CCWWGG	2 cut(s)	56, 63
Bst2UI	CCWGG	1 cut(s)	32
BstDSI	CCRYGG	2 cut(s)	56, 63
BstF5I	GGATG	2 cut(s)	26, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	2 cut(s)	56, 63
BtsCI	GGATG	2 cut(s)	26, 40
Cfr13I	GGNCC	2 cut(s)	53, 60
CviAII	CATG	4 cut(s)	15, 57, 64, 104
CviJI	RGCY	2 cut(s)	55, 131
CviKI_1	RGCY	2 cut(s)	55, 131
Eco130I	CCWWGG	2 cut(s)	56, 63
Eco47I	GGWCC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	56, 63
ErhI	CCWWGG	2 cut(s)	56, 63
FaeI	CATG	4 cut(s)	18, 60, 67, 107
FaiI	YATR	6 cut(s)	16, 58, 65, 93, 105, 118
FatI	CATG	4 cut(s)	14, 56, 63, 103
FokI	GGATG	2 cut(s)	13, 47
FspBI	CTAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	18, 60, 67, 107
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	18, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92II	CATG	4 cut(s)	18, 60, 67, 107
LpnPI	CCDG	3 cut(s)	17, 44, 126
MaeI	CTAG	1 cut(s)	128
MboII	GAAGA	2 cut(s)	80, 83
MluCI	AATT	1 cut(s)	145
MseI	TTAA	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	137
NcoI	CCATGG	2 cut(s)	56, 63
NlaIII	CATG	4 cut(s)	18, 60, 67, 107
PfeI	GAWTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	53, 60
SaqAI	TTAA	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	53, 60
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	1 cut(s)	115
SgeI	CNNG	7 cut(s)	27, 43, 44, 69, 76, 116, 140
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	145
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	56, 63
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	148
Tru9I	TTAA	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	60
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.