Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

1457389 .. 1460790

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATAAAAATCCATGCAATAGTTCATCCCAGGATGTTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGATCTGATTCTCATCAACTACATTGCAAATCATGGTGAAGGTGTATGGAACTCCCTAGCCAAAGCTGCTGGTCTCAAACGTACTGGGAAGAGCTGCCGACTCCGGTGGCTGAATTATCTGCGGCCTGATGTTCGGAGAGGCAATATCACTCCTGAGGAACAACTTTTGATTATGGAACTGCATGCAAAGTGGGGTAACAGGTGGTCGAAAATCGCAAAACATCTACCGGGAAGGACTGATAACGAAATCAAGAACTATTGGAGGACTAGAATTCAAAAGCACATTAAGCAAGCTGAGAATATTACACCAGGACAAAGCTCTGAGGTCAATGATCAAGCAAGCACAAGTCAAGTGTCAATCTCTAAAACTCTGGACACAATGGATATTTCCCACTCCGCACCAACACACCAAGCAAATATGGATGCTTATCCTCCTCCTTTACCTGCTGATCAATCTAATGATAACTACTGGAGCATGGAGGATCTCTGGTCTATGCAACTGCTAAATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

196

Amino Acids

22.31

Weight (kDa)

6.6

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AciI	CCGC	2 cut(s)	193, 468
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	342
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	41, 347
AjnI	CCWGG	2 cut(s)	30, 379
AluBI	AGCT	4 cut(s)	137, 165, 365, 390
AluI	AGCT	4 cut(s)	137, 165, 365, 390
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	2 cut(s)	53, 194
ApeKI	GCWGC	2 cut(s)	137, 165
ApoI	RAATTY	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	53, 60
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	60
AxyI	CCTNAGG	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	124, 152
BciT130I	CCWGG	2 cut(s)	32, 381
BclI	TGATCA	2 cut(s)	403, 520
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	128, 339
BfuAI	ACCTGC	1 cut(s)	523
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	138, 166, 194
BlsI	GCNGC	3 cut(s)	139, 167, 195
Bme1390I	CCNGG	3 cut(s)	32, 300, 381
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	53, 60
BmrFI	CCNGG	3 cut(s)	32, 300, 381
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	300
BsaBI	GATNNNNATC	3 cut(s)	9, 83, 498
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	30, 56, 63
BsaWI	WCCGGW	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	160, 545
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	3 cut(s)	9, 83, 498
BseBI	CCWGG	2 cut(s)	32, 381
BseDI	CCNNGG	3 cut(s)	30, 56, 63
BseGI	GGATG	3 cut(s)	26, 40, 499
BseJI	GATNNNNATC	3 cut(s)	9, 83, 498
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	3 cut(s)	216, 357, 384
BseNI	ACTGG	2 cut(s)	160, 545
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	124, 152
BshFI	GGCC	2 cut(s)	55, 196
BsiSI	CCGG	2 cut(s)	175, 299
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	55, 196
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	73, 403, 520, 553
Bsp19I	CCATGG	2 cut(s)	56, 63
BspACI	CCGC	2 cut(s)	193, 468
BspANI	GGCC	2 cut(s)	55, 196
BspCNI	CTCAG	3 cut(s)	217, 358, 385
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	160, 545
BssECI	CCNNGG	3 cut(s)	30, 56, 63
BssMI	GATC	4 cut(s)	73, 403, 520, 553
BssT1I	CCWWGG	2 cut(s)	56, 63
Bst2UI	CCWGG	2 cut(s)	32, 381
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	255, 363, 412
BstDEI	CTNAG	3 cut(s)	225, 366, 393
BstDSI	CCRYGG	2 cut(s)	56, 63
BstF5I	GGATG	3 cut(s)	26, 40, 499
BstKTI	GATC	4 cut(s)	76, 406, 523, 556
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	73, 403, 520, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 358
BstNI	CCWGG	2 cut(s)	32, 381
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	30, 298, 379
BstV1I	GCAGC	2 cut(s)	124, 152
BstX2I	RGATCY	2 cut(s)	73, 553
BstYI	RGATCY	2 cut(s)	73, 553
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	55, 196
BtgI	CCRYGG	2 cut(s)	56, 63
BtsCI	GGATG	3 cut(s)	26, 40, 499
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	255, 363, 412
Cfr13I	GGNCC	2 cut(s)	53, 60
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	6 cut(s)	15, 57, 64, 104, 254, 547
CviJI	RGCY	8 cut(s)	55, 131, 137, 165, 181, 196, 365, 390
CviKI_1	RGCY	8 cut(s)	55, 131, 137, 165, 181, 196, 365, 390
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	3 cut(s)	225, 366, 393
DpnI	GATC	4 cut(s)	75, 405, 522, 555
DpnII	GATC	4 cut(s)	73, 403, 520, 553
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	56, 63
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	60
Eco81I	CCTNAGG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	30, 379
EcoT14I	CCWWGG	2 cut(s)	56, 63
ErhI	CCWWGG	2 cut(s)	56, 63
FaeI	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
FatI	CATG	6 cut(s)	14, 56, 63, 103, 253, 546
FbaI	TGATCA	2 cut(s)	403, 520
Fnu4HI	GCNGC	3 cut(s)	138, 166, 194
FokI	GGATG	3 cut(s)	13, 47, 506
Fsp4HI	GCNGC	3 cut(s)	138, 166, 194
FspBI	CTAG	2 cut(s)	128, 339
GluI	GCNGC	3 cut(s)	138, 166, 194
GsuI	CTGGAG	1 cut(s)	562
HaeIII	GGCC	2 cut(s)	55, 196
HapII	CCGG	2 cut(s)	175, 299
Hin1II	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
HinfI	GANTC	2 cut(s)	79, 171
HpaII	CCGG	2 cut(s)	175, 299
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	78, 207, 394
Hpy188III	TCNNGA	3 cut(s)	224, 322, 443
HpyAV	CCTTC	2 cut(s)	104, 297
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	18, 98, 253, 257, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 358
HpyF3I	CTNAG	3 cut(s)	225, 366, 393
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
Ksp22I	TGATCA	2 cut(s)	403, 520
Kzo9I	GATC	4 cut(s)	73, 403, 520, 553
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	543
Lsp1109I	GCAGC	2 cut(s)	124, 152
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	128, 339
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	4 cut(s)	75, 405, 522, 555
MboI	GATC	4 cut(s)	73, 403, 520, 553
MboII	GAAGA	3 cut(s)	80, 83, 172
MflI	RGATCY	2 cut(s)	73, 553
MluCI	AATT	2 cut(s)	184, 342
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	203, 220, 327, 388, 513, 516, 544
MseI	TTAA	1 cut(s)	357
MspI	CCGG	2 cut(s)	175, 299
MspR9I	CCNGG	3 cut(s)	32, 300, 381
MvaI	CCWGG	2 cut(s)	32, 381
MwoI	GCNNNNNNNGC	2 cut(s)	137, 358
NciI	CCSGG	1 cut(s)	300
NcoI	CCATGG	2 cut(s)	56, 63
NdeII	GATC	4 cut(s)	73, 403, 520, 553
NlaIII	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	139, 167, 195
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	30, 379
PspGI	CCWGG	2 cut(s)	30, 379
PspPI	GGNCC	2 cut(s)	53, 60
PsuI	RGATCY	2 cut(s)	73, 553
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	138, 166, 194
Sau3AI	GATC	4 cut(s)	73, 403, 520, 553
Sau96I	GGNCC	2 cut(s)	53, 60
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	32, 300, 381
SetI	ASST	9 cut(s)	115, 139, 154, 167, 275, 367, 392, 399, 517
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	1 cut(s)	60
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	2 cut(s)	184, 342
SsiI	CCGC	2 cut(s)	193, 468
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	128, 339
StyD4I	CCNGG	3 cut(s)	30, 298, 379
StyI	CCWWGG	2 cut(s)	56, 63
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	184, 342
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseI	GCWGC	2 cut(s)	137, 165
TspDTI	ATGAA	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	2 cut(s)	128, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.