Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

10318455 .. 10319920

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCATCTTATCCTACTCTCGCTTCCATCAATCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGGTGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCATCCCTAACCCTCGAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCTTTAGCCCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGGATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAGAAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

191

Amino Acids

20.07

Weight (kDa)

5.51

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	65 - 115	5.1e-14	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	124 - 190	8.8e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	8, 255
AccII	CGCG	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	6 cut(s)	174, 303, 311, 314, 341, 344
AclWI	GGATC	2 cut(s)	204, 217
AcsI	RAATTY	2 cut(s)	101, 272
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	454, 545
AluBI	AGCT	9 cut(s)	185, 242, 425, 444, 461, 469, 521, 530, 551
AluI	AGCT	9 cut(s)	185, 242, 425, 444, 461, 469, 521, 530, 551
Alw26I	GTCTC	2 cut(s)	286, 568
AlwI	GGATC	2 cut(s)	204, 217
Aor13HI	TCCGGA	1 cut(s)	187
ApeKI	GCWGC	3 cut(s)	305, 308, 320
ApoI	RAATTY	2 cut(s)	101, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AspLEI	GCGC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	307, 317, 320
BccI	CCATC	3 cut(s)	74, 104, 165
BceAI	ACGGC	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	286, 568
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	7 cut(s)	174, 306, 309, 312, 321, 342, 345
BlsI	GCNGC	7 cut(s)	175, 307, 310, 313, 322, 343, 346
BmiI	GGNNCC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	542
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	567
BseAI	TCCGGA	1 cut(s)	187
BseGI	GGATG	2 cut(s)	131, 221
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	307, 317, 320
Bsh1236I	CGCG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	286, 568
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	204, 209
BspACI	CCGC	6 cut(s)	174, 303, 311, 314, 341, 344
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrDI	GCAATG	1 cut(s)	567
BssMI	GATC	2 cut(s)	204, 209
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	149, 335
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	462, 531
BstF5I	GGATG	2 cut(s)	131, 221
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	207, 212
BstMAI	GTCTC	2 cut(s)	286, 568
BstMBI	GATC	2 cut(s)	204, 209
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 305, 311, 317, 320, 326, 431, 527
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	307, 317, 320
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	131, 221
CfoI	GCGC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	462, 531
DpnI	GATC	2 cut(s)	206, 211
DpnII	GATC	2 cut(s)	204, 209
DraI	TTTAAA	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	101
FauI	CCCGC	1 cut(s)	310
FblI	GTMKAC	2 cut(s)	8, 255
Fnu4HI	GCNGC	7 cut(s)	174, 306, 309, 312, 321, 342, 345
FokI	GGATG	2 cut(s)	118, 208
Fsp4HI	GCNGC	7 cut(s)	174, 306, 309, 312, 321, 342, 345
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	7 cut(s)	174, 306, 309, 312, 321, 342, 345
GsuI	CTGGAG	1 cut(s)	309
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	2 cut(s)	9, 256
HindII	GTYRAC	2 cut(s)	9, 256
HinfI	GANTC	2 cut(s)	13, 538
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	9, 256
Hpy188I	TCNGA	3 cut(s)	209, 214, 396
Hpy188III	TCNNGA	4 cut(s)	84, 188, 199, 542
Hpy8I	GTNNAC	2 cut(s)	9, 256
Hpy99I	CGWCG	5 cut(s)	10, 13, 182, 257, 335
HpyAV	CCTTC	4 cut(s)	90, 448, 470, 494
HpyCH4III	ACNGT	2 cut(s)	149, 335
HpyCH4V	TGCA	2 cut(s)	152, 413
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 305, 311, 317, 320, 326, 431, 527
HpyF3I	CTNAG	2 cut(s)	462, 531
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	204, 209
LmnI	GCTCC	4 cut(s)	190, 328, 358, 466
LpnPI	CCDG	3 cut(s)	201, 339, 537
Lsp1109I	GCAGC	3 cut(s)	307, 317, 320
MaeI	CTAG	1 cut(s)	441
MalI	GATC	2 cut(s)	206, 211
MboI	GATC	2 cut(s)	204, 209
MboII	GAAGA	5 cut(s)	214, 248, 536, 547, 557
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	3 cut(s)	101, 272, 417
MlyI	GAGTC	2 cut(s)	7, 532
MnlI	CCTC	5 cut(s)	52, 118, 242, 260, 349
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	3 cut(s)	420, 495, 574
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	8 cut(s)	182, 305, 311, 317, 320, 326, 431, 527
NdeII	GATC	2 cut(s)	204, 209
NlaIV	GGNNCC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PkrI	GCNGC	7 cut(s)	175, 307, 310, 313, 322, 343, 346
PleI	GAGTC	2 cut(s)	7, 532
PpsI	GAGTC	2 cut(s)	7, 532
PspN4I	GGNNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	209
SalI	GTCGAC	2 cut(s)	7, 254
SaqAI	TTAA	3 cut(s)	420, 495, 574
SatI	GCNGC	7 cut(s)	174, 306, 309, 312, 321, 342, 345
Sau3AI	GATC	2 cut(s)	204, 209
SchI	GAGTC	2 cut(s)	7, 532
SfcI	CTRYAG	1 cut(s)	348
SgrDI	CGTCGACG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	101, 272, 417
SsiI	CCGC	6 cut(s)	174, 303, 311, 314, 341, 344
SspMI	CTAG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	149, 335
TaqI	TCGA	8 cut(s)	8, 99, 180, 198, 234, 255, 372, 474
TasI	AATT	3 cut(s)	101, 272, 417
TauI	GCSGC	4 cut(s)	176, 314, 344, 347
Tru1I	TTAA	3 cut(s)	420, 495, 574
Tru9I	TTAA	3 cut(s)	420, 495, 574
TseI	GCWGC	3 cut(s)	305, 308, 320
TspDTI	ATGAA	3 cut(s)	117, 402, 531
TspGWI	ACGGA	2 cut(s)	26, 152
XapI	RAATTY	2 cut(s)	101, 272
XmiI	GTMKAC	2 cut(s)	8, 255
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.