Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

2369282 .. 2369848

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1032900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCCACTCTCTCCACACTCACTCTGGGCACTCCCTCCTACCCCGCCACGCCCGCCGCCGCCTCCTTCCCCTCCCACTCCACCAAACCCACCCTCCAATTCCCCTTCAACCCCCAAATCCCCACCCTCACCCACCGCGCCACCCACGTCCGCCCCCTCGCCGCCGTCGAAGCCCCAGAAAAGATCGAGAAGCTCGGCACCGACATCTCCAGTCTCACCCTTGAGGAAGCCCGCATCCTCGTCGACTACCTCCAGGACAAGCTCGGCGTCTCCGCCGCTGCCCTCGCTCCAGCCGCCGCCGTAGCCGTGGCGCCAGGAGCGGGCGAGGGCCCCGCCGTCGTGGAGGAGAAGACGGAGTTCGACGTCGTCATCGAGGACGTGCCGAGCAACGCGAGAATCGCGGTGATCAAGGCGGTGAGGGCGTTGACGAGCCTGGCCCTGAAGGAGGCGAAGGAGCTGATTGAGGGTTTGCCGAAGAAGTTCAGGGAAGGGATTTCCAAGGACGAGGCGGAGGAGGCGAAGAAGCAGCTGGAAGCCGCCGGGGCGAAGATTAACATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

189

Amino Acids

19.7

Weight (kDa)

5.48

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 109	7.3e-14	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	121 - 187	1.3e-24	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
AccB1I	GGYRCC	2 cut(s)	200, 313
AccBSI	CCGCTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	3 cut(s)	141, 395, 404
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	3 cut(s)	270, 314, 366
AfiI	CCNNNNNNNGG	2 cut(s)	323, 448
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	2 cut(s)	151, 382
AjnI	CCWGG	3 cut(s)	255, 316, 435
AluBI	AGCT	4 cut(s)	196, 265, 460, 532
AluI	AGCT	4 cut(s)	196, 265, 460, 532
Alw26I	GTCTC	2 cut(s)	221, 277
AoxI	GGCC	2 cut(s)	331, 438
ApaI	GGGCCC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	5, 281, 529
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	143, 316
AspS9I	GGNCC	3 cut(s)	331, 332, 439
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	4 cut(s)	124, 211, 418, 430
BaeGI	GKGCMC	2 cut(s)	35, 335
BanI	GGYRCC	2 cut(s)	200, 313
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	268, 541
BceAI	ACGGC	4 cut(s)	152, 287, 293, 323
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	3 cut(s)	257, 318, 437
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	221, 277
BfoI	RGCGCY	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	545
Bme1390I	CCNGG	4 cut(s)	257, 318, 437, 544
BmgBI	CACGTC	2 cut(s)	151, 382
BmgT120I	GGNCC	3 cut(s)	331, 332, 439
BmiI	GGNNCC	4 cut(s)	202, 315, 333, 334
BmrFI	CCNGG	4 cut(s)	257, 318, 437, 544
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	3 cut(s)	196, 239, 276
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	544
BsaHI	GRCGYC	3 cut(s)	270, 314, 366
BsaJI	CCNNGG	3 cut(s)	309, 501, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 448
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	257, 318, 437
BseDI	CCNNGG	3 cut(s)	309, 501, 543
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	323, 448
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	362, 530
BseSI	GKGCMC	2 cut(s)	35, 335
BseXI	GCAGC	2 cut(s)	268, 541
Bsh1236I	CGCG	3 cut(s)	141, 395, 404
BshFI	GGCC	2 cut(s)	333, 440
BshNI	GGYRCC	2 cut(s)	200, 313
BsiSI	CCGG	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	323, 448
BsmAI	GTCTC	2 cut(s)	221, 277
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	333, 440
Bsp120I	GGGCCC	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	35, 335
Bsp143I	GATC	2 cut(s)	186, 408
BspANI	GGCC	2 cut(s)	333, 440
BspFNI	CGCG	3 cut(s)	141, 395, 404
BspLI	GGNNCC	4 cut(s)	202, 315, 333, 334
BspT107I	GGYRCC	2 cut(s)	200, 313
BsrBI	CCGCTC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	3 cut(s)	309, 501, 543
BssMI	GATC	2 cut(s)	186, 408
BssNI	GRCGYC	3 cut(s)	270, 314, 366
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	3 cut(s)	257, 318, 437
BstACI	GRCGYC	3 cut(s)	270, 314, 366
BstC8I	GCNNGC	3 cut(s)	57, 235, 325
BstDSI	CCRYGG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	3 cut(s)	141, 395, 404
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	2 cut(s)	143, 316
BstKTI	GATC	2 cut(s)	189, 411
BstMAI	GTCTC	2 cut(s)	221, 277
BstMBI	GATC	2 cut(s)	186, 408
BstNI	CCWGG	3 cut(s)	257, 318, 437
BstSCI	CCNGG	4 cut(s)	255, 316, 435, 542
BstSLI	GKGCMC	2 cut(s)	35, 335
BstUI	CGCG	3 cut(s)	141, 395, 404
BstV1I	GCAGC	2 cut(s)	268, 541
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	333, 440
BtgI	CCRYGG	1 cut(s)	309
BtrI	CACGTC	2 cut(s)	151, 382
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	3 cut(s)	57, 235, 325
CfoI	GCGC	2 cut(s)	143, 316
Cfr13I	GGNCC	3 cut(s)	331, 332, 439
CseI	GACGC	1 cut(s)	259
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	2 cut(s)	188, 410
DpnII	GATC	2 cut(s)	186, 408
EciI	GGCGGA	3 cut(s)	143, 265, 527
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	331, 332
EcoRII	CCWGG	3 cut(s)	255, 316, 435
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	335
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	277
FauI	CCCGC	5 cut(s)	55, 64, 242, 316, 343
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	335
GlaI	GCGC	2 cut(s)	142, 315
GsuI	CTGGAG	3 cut(s)	196, 239, 276
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	333, 440
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	2 cut(s)	143, 316
Hin1I	GRCGYC	3 cut(s)	270, 314, 366
Hin6I	GCGC	2 cut(s)	141, 314
HinP1I	GCGC	2 cut(s)	141, 314
HincII	GTYRAC	2 cut(s)	247, 429
HindII	GTYRAC	2 cut(s)	247, 429
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	4 cut(s)	124, 211, 418, 430
Hpy166II	GTNNAC	2 cut(s)	247, 429
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	247, 429
Hpy99I	CGWCG	5 cut(s)	173, 248, 344, 368, 371
HpyAV	CCTTC	5 cut(s)	79, 118, 439, 448, 485
HpyCH4IV	ACGT	3 cut(s)	150, 366, 381
HpySE526I	ACGT	3 cut(s)	150, 366, 381
Hsp92I	GRCGYC	3 cut(s)	270, 314, 366
HspAI	GCGC	2 cut(s)	141, 314
KasI	GGCGCC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	186, 408
LmnI	GCTCC	3 cut(s)	295, 320, 457
Lsp1109I	GCAGC	2 cut(s)	268, 541
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	3 cut(s)	150, 366, 381
MalI	GATC	2 cut(s)	188, 410
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	2 cut(s)	186, 408
MboII	GAAGA	4 cut(s)	364, 490, 535, 562
MhlI	GDGCHC	2 cut(s)	35, 335
MluCI	AATT	1 cut(s)	101
Mly113I	GGCGCC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	2 cut(s)	555, 565
MspA1I	CMGCKG	2 cut(s)	281, 532
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	4 cut(s)	257, 318, 437, 544
MvaI	CCWGG	3 cut(s)	257, 318, 437
MvnI	CGCG	3 cut(s)	141, 395, 404
NarI	GGCGCC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	2 cut(s)	186, 408
NlaIV	GGNNCC	4 cut(s)	202, 315, 333, 334
NmeAIII	GCCGAG	3 cut(s)	177, 246, 411
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 372
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	399
PflFI	GACNNNGTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	255
PluTI	GGCGCC	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	255, 316, 435
PspGI	CCWGG	3 cut(s)	255, 316, 435
PspN4I	GGNNCC	4 cut(s)	202, 315, 333, 334
PspOMI	GGGCCC	1 cut(s)	331
PspPI	GGNCC	3 cut(s)	331, 332, 439
PsyI	GACNNNGTC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	532
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	555, 565
Sau3AI	GATC	2 cut(s)	186, 408
Sau96I	GGNCC	3 cut(s)	331, 332, 439
ScrFI	CCNGG	4 cut(s)	257, 318, 437, 544
SduI	GDGCHC	2 cut(s)	35, 335
SetI	ASST	8 cut(s)	153, 198, 255, 267, 369, 384, 462, 534
SfaNI	GCATC	1 cut(s)	246
SfoI	GGCGCC	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	313
StyD4I	CCNGG	4 cut(s)	255, 316, 435, 542
StyI	CCWWGG	1 cut(s)	501
TaiI	ACGT	3 cut(s)	153, 369, 384
TaqI	TCGA	5 cut(s)	171, 189, 246, 363, 375
TasI	AATT	1 cut(s)	101
TauI	GCSGC	7 cut(s)	62, 65, 167, 281, 299, 302, 542
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	555, 565
Tru9I	TTAA	2 cut(s)	555, 565
TseI	GCWGC	3 cut(s)	5, 281, 529
TspGWI	ACGGA	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	482
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.