Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Reverse (-)

79078298 .. 79079290

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG614000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCCTCTCTCTCTACTCTCACACTCGGCACTCCTTCTTACCCATCGACCACCACCTCTTCCTTCCCTTCCCACACTCCCAAACCCTCCCTCCAATTCCCCTTCACCCCCCAAAACCCCACCCTCTCCCACCGCGCAACCCACCTCCGCCCCGTCGCCGCCGCCGTCGCCGCCCCGGAGAAAATCGAGAAGCTCGGCGCCGACATCTCCAGCCTCACTCTCGAGGAGGCCCGCATCCTCGTCGACTACCTCCAGGACAAGCTCGGCGTCTCCGCCGCCTCCCTCGCTCCCGCCGCCGCTGTCGCCGCGGCACCCGGAGCCGGAGAGGCCCCCGCCGCGGCGGTGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTCCCGAGCAATGCGAGAATCGCGGTGATTAAGGCGGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCCAAGGAGCTGATTGAAGGTTTGCCCAAGAAATTCAAGGAGGGGGTTTCGAAGGACGATGCCGAAGACGCCAAGAAGCAGCTGGAAGCCGCCGGAGCTAAAGTCGGAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

188

Amino Acids

19.42

Weight (kDa)

5.96

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 110	1.3e-13	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	121 - 187	6.5e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 313
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	4 cut(s)	138, 311, 341, 404
AcsI	RAATTY	1 cut(s)	482
AcyI	GRCGYC	3 cut(s)	201, 270, 519
AfiI	CCNNNNNNNGG	2 cut(s)	323, 340
AgsI	TTSAA	3 cut(s)	445, 467, 487
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	6 cut(s)	196, 265, 435, 460, 532, 548
AluI	AGCT	6 cut(s)	196, 265, 435, 460, 532, 548
Alw26I	GTCTC	1 cut(s)	277
Ama87I	CYCGRG	2 cut(s)	224, 385
AoxI	GGCC	3 cut(s)	231, 330, 450
ApeKI	GCWGC	2 cut(s)	5, 529
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	140, 203
AspS9I	GGNCC	3 cut(s)	232, 331, 382
AsuC2I	CCSGG	2 cut(s)	179, 318
AsuHPI	GGTGA	3 cut(s)	100, 382, 418
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	2 cut(s)	224, 385
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	2 cut(s)	200, 313
BbsI	GAAGAC	2 cut(s)	359, 522
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	2 cut(s)	179, 318
BcoDI	GTCTC	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	179, 257, 318
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	2 cut(s)	224, 385
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	232, 331, 382
BmiI	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
BmrFI	CCNGG	3 cut(s)	179, 257, 318
BmsI	GCATC	2 cut(s)	246, 499
BpiI	GAAGAC	2 cut(s)	359, 522
BpmI	CTGGAG	2 cut(s)	196, 239
Bpu14I	TTCGAA	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	179, 318
BsaHI	GRCGYC	3 cut(s)	201, 270, 519
BsaJI	CCNNGG	4 cut(s)	177, 309, 339, 453
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 340
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	4 cut(s)	177, 309, 339, 453
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	323, 340
BseMI	GCAATG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	242, 392
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	4 cut(s)	138, 311, 341, 404
BshFI	GGCC	3 cut(s)	233, 332, 452
BshNI	GGYRCC	2 cut(s)	200, 313
BsiHKCI	CYCGRG	2 cut(s)	224, 385
BsiSI	CCGG	4 cut(s)	179, 318, 324, 543
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	323, 340
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	233, 332, 452
BsoBI	CYCGRG	2 cut(s)	224, 385
Bsp119I	TTCGAA	1 cut(s)	500
BspANI	GGCC	3 cut(s)	233, 332, 452
BspFNI	CGCG	4 cut(s)	138, 311, 341, 404
BspLI	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	200, 313
BsrDI	GCAATG	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	177, 309, 339, 453
BssNI	GRCGYC	3 cut(s)	201, 270, 519
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	3 cut(s)	201, 270, 519
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	235
BstDSI	CCRYGG	2 cut(s)	309, 339
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	4 cut(s)	138, 311, 341, 404
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	140, 203
BstMAI	GTCTC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	177, 255, 316
BstUI	CGCG	4 cut(s)	138, 311, 341, 404
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	2 cut(s)	359, 522
BsuRI	GGCC	3 cut(s)	233, 332, 452
BtgI	CCRYGG	2 cut(s)	309, 339
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	2 cut(s)	140, 203
Cfr13I	GGNCC	3 cut(s)	232, 331, 382
Cfr42I	CCGCGG	2 cut(s)	312, 342
CseI	GACGC	2 cut(s)	259, 527
DinI	GGCGCC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	2 cut(s)	140, 265
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	2 cut(s)	224, 385
EcoO109I	RGGNCCY	2 cut(s)	331, 382
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	277
FaqI	GGGAC	1 cut(s)	368
FauI	CCCGC	3 cut(s)	242, 301, 343
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	224
GlaI	GCGC	2 cut(s)	139, 202
GsuI	CTGGAG	2 cut(s)	196, 239
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	233, 332, 452
HapII	CCGG	4 cut(s)	179, 318, 324, 543
HgaI	GACGC	2 cut(s)	259, 527
HhaI	GCGC	2 cut(s)	140, 203
Hin1I	GRCGYC	3 cut(s)	201, 270, 519
Hin6I	GCGC	2 cut(s)	138, 201
HinP1I	GCGC	2 cut(s)	138, 201
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	4 cut(s)	179, 318, 324, 543
HphI	GGTGA	3 cut(s)	100, 382, 418
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	557, 566
Hpy188III	TCNNGA	3 cut(s)	190, 224, 385
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	4 cut(s)	161, 173, 248, 368
HpyAV	CCTTC	7 cut(s)	48, 76, 81, 115, 439, 461, 496
HpyCH4IV	ACGT	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	3 cut(s)	201, 270, 519
HspAI	GCGC	2 cut(s)	138, 201
KasI	GGCGCC	1 cut(s)	200
KspI	CCGCGG	2 cut(s)	312, 342
LmnI	GCTCC	4 cut(s)	295, 320, 457, 545
LpnPI	CCDG	8 cut(s)	192, 226, 242, 269, 331, 337, 518, 556
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	246, 499
MaeII	ACGT	1 cut(s)	366
MboII	GAAGA	3 cut(s)	54, 364, 527
MluCI	AATT	3 cut(s)	98, 482, 558
Mly113I	GGCGCC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	535
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	4 cut(s)	302, 311, 341, 532
MspI	CCGG	4 cut(s)	179, 318, 324, 543
MspR9I	CCNGG	3 cut(s)	179, 257, 318
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	4 cut(s)	138, 311, 341, 404
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	2 cut(s)	179, 318
NlaIV	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
NmeAIII	GCCGAG	3 cut(s)	9, 177, 246
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 437
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	255
PluTI	GGCGCC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
PspPI	GGNCC	3 cut(s)	232, 331, 382
PspPPI	RGGWCCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	532
SacII	CCGCGG	2 cut(s)	312, 342
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	411
Sau96I	GGNCC	3 cut(s)	232, 331, 382
ScrFI	CCNGG	3 cut(s)	179, 257, 318
SfaNI	GCATC	2 cut(s)	246, 499
SfoI	GGCGCC	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	2 cut(s)	312, 342
SfuI	TTCGAA	1 cut(s)	500
SgrBI	CCGCGG	2 cut(s)	312, 342
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	98, 482, 558
SspDI	GGCGCC	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	177, 255, 316
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	6 cut(s)	50, 189, 225, 246, 363, 500
TasI	AATT	3 cut(s)	98, 482, 558
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	2 cut(s)	5, 529
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.