Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

2900879 .. 2903409

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCGCCTCTCTCTCTACTCTCACACTCGGCACTCCTTCTTACCCCGCCACCACCACCTCTTCCTTCCCTTCCCACACTCCCAAACCCTCCCTCCAATTCCCCTTCAGCCCCCAAAACCCTACCCTCTCCCACCGCGCAACCCACCTCCGCCCCCTCGCCGTCGCTGCCGCCGCCCCGGAGAAAATCGAGAAGCTCGGCGCCGACATTTCCAGCCTCACTCTCGAGGAGGCCCGCGTCCTCGTCGACTACCTCCAGGACAAGCTCGGCGTCTCCGCCGCCGCCCTCGCTCCAGCCGCCGCTGTCGCCGCGGCCCCAGGCGCCGGCGACGCGCCCGCCGCGGCGGTGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTCCCGAGCAATGCGAGAATCGCGGTGATTAAGGCGGTTAGGGCTTTGACGAGCTTGGCTTTGAAGGAGGCCAAGGAGCTGATTGAAGGGTTGCCCAAGAAATTCAAGGAGGGGGTTTCGAAGGACGATGCCGAAGACGCCAAGAAGCAGCTGGAAGCCGCCGGAGCTAAAGTCGGAATTTTTGTAGATGAGTTTAGAGAGGGCGACGTGTTAGTTATTGAGAGGGATGGTGATGAGATTGGTGATGCACAGGTTGGTGATGGTATCAATCTTGCACATGTGGTTGATGGTGTTACTGGGGGAGTGAACGCGATTGAAAAGAATGATGCTTTTAATGCAAATTTGCCTGTGGATGAGACTTTGGGAGATAATTCTCCTAAGCAATGTGTTTGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

259

Amino Acids

26.88

Weight (kDa)

4.78

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 110	4e-13	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	121 - 186	1e-24	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	765
Acc36I	ACCTGC	1 cut(s)	765
AccB1I	GGYRCC	2 cut(s)	200, 320
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	7 cut(s)	138, 237, 311, 332, 341, 404, 692
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	482, 558, 721
AcuI	CTGAAG	1 cut(s)	91
AcyI	GRCGYC	4 cut(s)	201, 270, 321, 519
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	2 cut(s)	588, 658
AgsI	TTSAA	4 cut(s)	445, 467, 487, 698
AjiI	CACGTC	2 cut(s)	367, 589
AjnI	CCWGG	2 cut(s)	255, 316
AluBI	AGCT	6 cut(s)	196, 265, 435, 460, 532, 548
AluI	AGCT	6 cut(s)	196, 265, 435, 460, 532, 548
Alw26I	GTCTC	2 cut(s)	277, 731
Ama87I	CYCGRG	2 cut(s)	224, 385
AoxI	GGCC	4 cut(s)	3, 231, 312, 450
ApeKI	GCWGC	2 cut(s)	167, 529
ApoI	RAATTY	3 cut(s)	482, 558, 721
AspLEI	GCGC	4 cut(s)	140, 203, 323, 334
AspS9I	GGNCC	3 cut(s)	232, 313, 382
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	5 cut(s)	382, 418, 623, 635, 650
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	2 cut(s)	224, 385
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	2 cut(s)	200, 320
BbsI	GAAGAC	2 cut(s)	359, 522
BbvI	GCAGC	2 cut(s)	154, 541
BccI	CCATC	3 cut(s)	602, 635, 662
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	257, 318
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	277, 731
BfoI	RGCGCY	2 cut(s)	204, 324
BfuAI	ACCTGC	1 cut(s)	765
Bme1390I	CCNGG	3 cut(s)	179, 257, 318
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	2 cut(s)	224, 385
BmgBI	CACGTC	2 cut(s)	367, 589
BmgT120I	GGNCC	3 cut(s)	232, 313, 382
BmiI	GGNNCC	4 cut(s)	202, 315, 322, 384
BmrFI	CCNGG	3 cut(s)	179, 257, 318
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	3 cut(s)	499, 616, 697
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	2 cut(s)	359, 522
BpmI	CTGGAG	2 cut(s)	239, 276
Bpu10I	CCTNAGC	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	4 cut(s)	201, 270, 321, 519
BsaJI	CCNNGG	5 cut(s)	177, 309, 316, 339, 453
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	2 cut(s)	397, 770
BseBI	CCWGG	2 cut(s)	257, 318
BseDI	CCNNGG	5 cut(s)	177, 309, 316, 339, 453
BseGI	GGATG	2 cut(s)	613, 739
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	2 cut(s)	397, 770
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	2 cut(s)	242, 392
BseXI	GCAGC	2 cut(s)	154, 541
Bsh1236I	CGCG	7 cut(s)	138, 237, 311, 332, 341, 404, 692
BshFI	GGCC	4 cut(s)	5, 233, 314, 452
BshNI	GGYRCC	2 cut(s)	200, 320
BsiHKCI	CYCGRG	2 cut(s)	224, 385
BsiSI	CCGG	3 cut(s)	179, 324, 543
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	277, 731
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	5, 233, 314, 452
BsoBI	CYCGRG	2 cut(s)	224, 385
Bsp119I	TTCGAA	1 cut(s)	500
BspANI	GGCC	4 cut(s)	5, 233, 314, 452
BspFNI	CGCG	7 cut(s)	138, 237, 311, 332, 341, 404, 692
BspLI	GGNNCC	4 cut(s)	202, 315, 322, 384
BspMI	ACCTGC	1 cut(s)	765
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	200, 320
BsrDI	GCAATG	2 cut(s)	397, 770
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	5 cut(s)	177, 309, 316, 339, 453
BssNI	GRCGYC	4 cut(s)	201, 270, 321, 519
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	257, 318
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	4 cut(s)	201, 270, 321, 519
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	235, 325, 336
BstDEI	CTNAG	1 cut(s)	759
BstDSI	CCRYGG	2 cut(s)	309, 339
BstF5I	GGATG	2 cut(s)	613, 739
BstFNI	CGCG	7 cut(s)	138, 237, 311, 332, 341, 404, 692
BstH2I	RGCGCY	2 cut(s)	204, 324
BstHHI	GCGC	4 cut(s)	140, 203, 323, 334
BstMAI	GTCTC	2 cut(s)	277, 731
BstNI	CCWGG	2 cut(s)	257, 318
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	3 cut(s)	177, 255, 316
BstUI	CGCG	7 cut(s)	138, 237, 311, 332, 341, 404, 692
BstV1I	GCAGC	2 cut(s)	154, 541
BstV2I	GAAGAC	2 cut(s)	359, 522
BsuRI	GGCC	4 cut(s)	5, 233, 314, 452
BtgI	CCRYGG	2 cut(s)	309, 339
BtrI	CACGTC	2 cut(s)	367, 589
BtsCI	GGATG	2 cut(s)	613, 739
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	3 cut(s)	235, 325, 336
CfoI	GCGC	4 cut(s)	140, 203, 323, 334
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	232, 313, 382
Cfr42I	CCGCGG	2 cut(s)	312, 342
CseI	GACGC	4 cut(s)	226, 259, 338, 527
CviAII	CATG	1 cut(s)	659
DdeI	CTNAG	1 cut(s)	759
DinI	GGCGCC	2 cut(s)	202, 322
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	2 cut(s)	140, 265
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	91
Eco88I	CYCGRG	2 cut(s)	224, 385
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	255, 316
EcoT14I	CCWWGG	1 cut(s)	453
EgeI	GGCGCC	2 cut(s)	202, 322
EheI	GGCGCC	2 cut(s)	202, 322
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	662
FaiI	YATR	1 cut(s)	660
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	658
FauI	CCCGC	3 cut(s)	55, 242, 343
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	2 cut(s)	620, 746
GlaI	GCGC	4 cut(s)	139, 202, 322, 333
GsuI	CTGGAG	2 cut(s)	239, 276
HaeII	RGCGCY	2 cut(s)	204, 324
HaeIII	GGCC	4 cut(s)	5, 233, 314, 452
HapII	CCGG	3 cut(s)	179, 324, 543
HgaI	GACGC	4 cut(s)	226, 259, 338, 527
HhaI	GCGC	4 cut(s)	140, 203, 323, 334
Hin1I	GRCGYC	4 cut(s)	201, 270, 321, 519
Hin1II	CATG	1 cut(s)	662
Hin6I	GCGC	4 cut(s)	138, 201, 321, 332
HinP1I	GCGC	4 cut(s)	138, 201, 321, 332
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	3 cut(s)	179, 324, 543
HphI	GGTGA	5 cut(s)	382, 418, 623, 635, 650
Hpy166II	GTNNAC	2 cut(s)	247, 688
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	3 cut(s)	190, 224, 385
Hpy8I	GTNNAC	2 cut(s)	247, 688
Hpy99I	CGWCG	5 cut(s)	167, 248, 332, 368, 590
HpyAV	CCTTC	7 cut(s)	48, 76, 81, 115, 439, 461, 496
HpyCH4IV	ACGT	2 cut(s)	366, 588
HpyCH4V	TGCA	4 cut(s)	629, 656, 719, 774
HpyF3I	CTNAG	1 cut(s)	759
HpySE526I	ACGT	2 cut(s)	366, 588
Hsp92I	GRCGYC	4 cut(s)	201, 270, 321, 519
Hsp92II	CATG	1 cut(s)	662
HspAI	GCGC	4 cut(s)	138, 201, 321, 332
KasI	GGCGCC	2 cut(s)	200, 320
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
KspI	CCGCGG	2 cut(s)	312, 342
LmnI	GCTCC	3 cut(s)	295, 457, 545
Lsp1109I	GCAGC	2 cut(s)	154, 541
LweI	GCATC	3 cut(s)	499, 616, 697
MaeII	ACGT	2 cut(s)	366, 588
MaeIII	GTNAC	1 cut(s)	673
MboII	GAAGA	3 cut(s)	54, 364, 527
MluCI	AATT	5 cut(s)	98, 482, 558, 721, 751
Mly113I	GGCGCC	2 cut(s)	201, 321
MmeI	TCCRAC	1 cut(s)	535
MreI	CGCCGGCG	1 cut(s)	323
MroNI	GCCGGC	1 cut(s)	323
MseI	TTAA	2 cut(s)	411, 714
MspA1I	CMGCKG	4 cut(s)	302, 311, 341, 532
MspI	CCGG	3 cut(s)	179, 324, 543
MspR9I	CCNGG	3 cut(s)	179, 257, 318
MvaI	CCWGG	2 cut(s)	257, 318
MvnI	CGCG	7 cut(s)	138, 237, 311, 332, 341, 404, 692
NaeI	GCCGGC	1 cut(s)	325
NarI	GGCGCC	2 cut(s)	201, 321
NciI	CCSGG	1 cut(s)	179
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	662
NlaIV	GGNNCC	4 cut(s)	202, 315, 322, 384
NmeAIII	GCCGAG	3 cut(s)	9, 177, 246
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	765
PciI	ACATGT	1 cut(s)	658
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	255
PluTI	GGCGCC	2 cut(s)	204, 324
PpuMI	RGGWCCY	1 cut(s)	382
PscI	ACATGT	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	255, 316
PspGI	CCWGG	2 cut(s)	255, 316
PspN4I	GGNNCC	4 cut(s)	202, 315, 322, 384
PspPI	GGNCC	3 cut(s)	232, 313, 382
PspPPI	RGGWCCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	532
SacII	CCGCGG	2 cut(s)	312, 342
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	411, 714
Sau96I	GGNCC	3 cut(s)	232, 313, 382
ScrFI	CCNGG	3 cut(s)	179, 257, 318
SfaNI	GCATC	3 cut(s)	499, 616, 697
SfoI	GGCGCC	2 cut(s)	202, 322
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	2 cut(s)	312, 342
SfuI	TTCGAA	1 cut(s)	500
SgrAI	CRCCGGYG	1 cut(s)	323
SgrBI	CCGCGG	2 cut(s)	312, 342
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	5 cut(s)	98, 482, 558, 721, 751
SspDI	GGCGCC	2 cut(s)	200, 320
StyD4I	CCNGG	3 cut(s)	177, 255, 316
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	2 cut(s)	369, 591
TaqI	TCGA	5 cut(s)	189, 225, 246, 363, 500
TasI	AATT	5 cut(s)	98, 482, 558, 721, 751
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	411, 714
Tru9I	TTAA	2 cut(s)	411, 714
TseI	GCWGC	2 cut(s)	167, 529
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	3 cut(s)	482, 558, 721
XceI	RCATGY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.