Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Reverse (-)

80936542 .. 80937111

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCGCCTCTCTCTCTACTCTCACACTCGGCACTCCTTCTTACCCATCAACCACCACCTCTTCCTTCCCTTCTCACACTCCCAAACCCTCCCTCCAATTCCCCTTCAACCCCCAAAACCCTACCCTCTCCCACCGCGCAACCCACCTCCGCCCCCTCGCCGCCTTCGCCGCCCCGGAGAATATCGAGAAGCTCGGCGCCGACATCTCCAGCCTCACTCTCGAGGAGGCCCGCATCCTCGTCGACTACCTCCAGGACAAGCTCGGCGTCTCCGCCGCCTCCCTCGCTCCAGCCGCCGCTGTCGCCGCGGCCCCCGGCGCCGGAGCCGGCGACGCCCCCGCCGCGGCGGTGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTCCCGAGCAATGCGAGAATCGCGGTGATTAAGGCGGTTAGGGCTTTGACGAGCTTGGCTTTGAAGGAGGCCAAGGAGCTTATTGAAGGGTTGCCCAAGAAATTCAAGGAGGGAGTTTCCAAGGACGATGCCGAAGACGCCAAGAAGCAGCTGGAAGCCGCCGGAGCTAAAGTCGGAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

190

Amino Acids

19.52

Weight (kDa)

5.66

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 109	8.1e-13	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	122 - 188	6.6e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 317
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	4 cut(s)	138, 308, 344, 407
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	5 cut(s)	198, 267, 318, 333, 522
AfiI	CCNNNNNNNGG	2 cut(s)	320, 343
AgsI	TTSAA	4 cut(s)	109, 448, 470, 490
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	6 cut(s)	193, 262, 438, 463, 535, 551
AluI	AGCT	6 cut(s)	193, 262, 438, 463, 535, 551
Alw26I	GTCTC	1 cut(s)	274
Ama87I	CYCGRG	2 cut(s)	221, 388
AoxI	GGCC	4 cut(s)	3, 228, 309, 453
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	485
AspLEI	GCGC	3 cut(s)	140, 200, 320
AspS9I	GGNCC	3 cut(s)	229, 310, 385
AsuC2I	CCSGG	2 cut(s)	176, 315
AsuHPI	GGTGA	2 cut(s)	385, 421
AvaI	CYCGRG	2 cut(s)	221, 388
AvaII	GGWCC	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	197, 317
BbsI	GAAGAC	2 cut(s)	362, 525
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	176, 315
BcoDI	GTCTC	1 cut(s)	274
BfoI	RGCGCY	2 cut(s)	201, 321
Bme1390I	CCNGG	3 cut(s)	176, 254, 315
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	2 cut(s)	221, 388
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	229, 310, 385
BmiI	GGNNCC	5 cut(s)	199, 312, 319, 325, 387
BmrFI	CCNGG	3 cut(s)	176, 254, 315
BmsI	GCATC	2 cut(s)	243, 502
BpiI	GAAGAC	2 cut(s)	362, 525
BpmI	CTGGAG	3 cut(s)	193, 236, 273
BpuMI	CCSGG	2 cut(s)	176, 315
BsaHI	GRCGYC	5 cut(s)	198, 267, 318, 333, 522
BsaJI	CCNNGG	6 cut(s)	174, 306, 313, 342, 456, 504
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 343
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	6 cut(s)	174, 306, 313, 342, 456, 504
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	320, 343
BseMI	GCAATG	1 cut(s)	400
BseRI	GAGGAG	2 cut(s)	239, 395
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	4 cut(s)	138, 308, 344, 407
BshFI	GGCC	4 cut(s)	5, 230, 311, 455
BshNI	GGYRCC	2 cut(s)	197, 317
BsiHKCI	CYCGRG	2 cut(s)	221, 388
BsiSI	CCGG	5 cut(s)	176, 315, 321, 327, 546
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	320, 343
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	4 cut(s)	5, 230, 311, 455
BsoBI	CYCGRG	2 cut(s)	221, 388
BspANI	GGCC	4 cut(s)	5, 230, 311, 455
BspFNI	CGCG	4 cut(s)	138, 308, 344, 407
BspLI	GGNNCC	5 cut(s)	199, 312, 319, 325, 387
BspT107I	GGYRCC	2 cut(s)	197, 317
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	6 cut(s)	174, 306, 313, 342, 456, 504
BssNI	GRCGYC	5 cut(s)	198, 267, 318, 333, 522
BssT1I	CCWWGG	2 cut(s)	456, 504
Bst2UI	CCWGG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	5 cut(s)	198, 267, 318, 333, 522
BstC8I	GCNNGC	2 cut(s)	232, 328
BstDSI	CCRYGG	2 cut(s)	306, 342
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	4 cut(s)	138, 308, 344, 407
BstH2I	RGCGCY	2 cut(s)	201, 321
BstHHI	GCGC	3 cut(s)	140, 200, 320
BstMAI	GTCTC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	174, 252, 313
BstUI	CGCG	4 cut(s)	138, 308, 344, 407
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	2 cut(s)	362, 525
BsuRI	GGCC	4 cut(s)	5, 230, 311, 455
BtgI	CCRYGG	2 cut(s)	306, 342
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	232, 328
CfoI	GCGC	3 cut(s)	140, 200, 320
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	229, 310, 385
Cfr42I	CCGCGG	2 cut(s)	309, 345
CseI	GACGC	3 cut(s)	256, 341, 530
DinI	GGCGCC	2 cut(s)	199, 319
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	2 cut(s)	140, 262
Eco130I	CCWWGG	2 cut(s)	456, 504
Eco47I	GGWCC	1 cut(s)	385
Eco88I	CYCGRG	2 cut(s)	221, 388
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	456, 504
EgeI	GGCGCC	2 cut(s)	199, 319
EheI	GGCGCC	2 cut(s)	199, 319
ErhI	CCWWGG	2 cut(s)	456, 504
Esp3I	CGTCTC	1 cut(s)	274
FaqI	GGGAC	1 cut(s)	371
FauI	CCCGC	2 cut(s)	239, 346
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	221
GlaI	GCGC	3 cut(s)	139, 199, 319
GsuI	CTGGAG	3 cut(s)	193, 236, 273
HaeII	RGCGCY	2 cut(s)	201, 321
HaeIII	GGCC	4 cut(s)	5, 230, 311, 455
HapII	CCGG	5 cut(s)	176, 315, 321, 327, 546
HgaI	GACGC	3 cut(s)	256, 341, 530
HhaI	GCGC	3 cut(s)	140, 200, 320
Hin1I	GRCGYC	5 cut(s)	198, 267, 318, 333, 522
Hin6I	GCGC	3 cut(s)	138, 198, 318
HinP1I	GCGC	3 cut(s)	138, 198, 318
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	402
HpaII	CCGG	5 cut(s)	176, 315, 321, 327, 546
HphI	GGTGA	2 cut(s)	385, 421
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	560, 569
Hpy188III	TCNNGA	3 cut(s)	187, 221, 388
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	245, 335, 371
HpyAV	CCTTC	7 cut(s)	48, 76, 81, 115, 175, 442, 464
HpyCH4IV	ACGT	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	5 cut(s)	198, 267, 318, 333, 522
HspAI	GCGC	3 cut(s)	138, 198, 318
KasI	GGCGCC	2 cut(s)	197, 317
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
KspI	CCGCGG	2 cut(s)	309, 345
LmnI	GCTCC	4 cut(s)	292, 323, 460, 548
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	2 cut(s)	243, 502
MaeII	ACGT	1 cut(s)	369
MboII	GAAGA	3 cut(s)	54, 367, 530
MluCI	AATT	3 cut(s)	98, 485, 561
Mly113I	GGCGCC	2 cut(s)	198, 318
MmeI	TCCRAC	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	326
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	4 cut(s)	299, 308, 344, 535
MspI	CCGG	5 cut(s)	176, 315, 321, 327, 546
MspR9I	CCNGG	3 cut(s)	176, 254, 315
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	4 cut(s)	138, 308, 344, 407
NaeI	GCCGGC	1 cut(s)	328
NarI	GGCGCC	2 cut(s)	198, 318
NciI	CCSGG	2 cut(s)	176, 315
NgoMIV	GCCGGC	1 cut(s)	326
NlaIV	GGNNCC	5 cut(s)	199, 312, 319, 325, 387
NmeAIII	GCCGAG	3 cut(s)	9, 174, 243
PaeR7I	CTCGAG	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	252
PluTI	GGCGCC	2 cut(s)	201, 321
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	5 cut(s)	199, 312, 319, 325, 387
PspPI	GGNCC	3 cut(s)	229, 310, 385
PspPPI	RGGWCCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	535
SacII	CCGCGG	2 cut(s)	309, 345
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	414
Sau96I	GGNCC	3 cut(s)	229, 310, 385
ScrFI	CCNGG	3 cut(s)	176, 254, 315
SfaNI	GCATC	2 cut(s)	243, 502
SfoI	GGCGCC	2 cut(s)	199, 319
Sfr274I	CTCGAG	1 cut(s)	221
Sfr303I	CCGCGG	2 cut(s)	309, 345
SgrBI	CCGCGG	2 cut(s)	309, 345
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	98, 485, 561
SspDI	GGCGCC	2 cut(s)	197, 317
StyD4I	CCNGG	3 cut(s)	174, 252, 313
StyI	CCWWGG	2 cut(s)	456, 504
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	186, 222, 243, 366
TasI	AATT	3 cut(s)	98, 485, 561
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseI	GCWGC	1 cut(s)	532
TspGWI	ACGGA	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.