Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Reverse (-)

20271609 .. 20272300

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCTTAACTAAAGGGATCGGCGTCGTCGAACACCGTTGCGCCACACCCTCCGCCTCATACTCCTCCAAACCCACCCGCCAATTCCCCTTCAACCCCCAAAATCCTTCCCTCACCTACCGCGACACCCACATACTCCCCCTCGCCGCCGTCGAAGCCCCAGAAAATATCGAAAACCTCCGCCTCAAGAGGATGGTCATCTCCGACGAAATCCTTGAGCTTCTTTTCAGATTTGACGAGGGGAAGGGGTGTGCCTGCGATTCAACGGGAAGGGATGGGCCTACGAATAGACGGGAACGGAGGAGTCGTTGCATCAATGAGGATGGGTCTCTCGACAAGAGAGATGGCGTCGACGAATCTAATCTGGAAGAAGAGGTGGCCAGCGGGAGTTCGTGCTTGGGTTCGAGACGGCAATGTGCAGAGGGAAGGGATGATGGGTTTTGGCCGTGCGGTAGAGGTGGGTCGAATTGGGAGGTGGGTTTTGGTCGGCAATCGACATGGAGCCCGGCCTGGATCTGTACGGTTGATGAGGTAGTTGATGAGGCAATCAAAATGGTTTTGGCCGTGCAGTTGATGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

194

Amino Acids

21.52

Weight (kDa)

5.22

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	123
AciI	CCGC	7 cut(s)	54, 79, 121, 147, 181, 384, 450
AclWI	GGATC	2 cut(s)	26, 521
AcoI	YGGCCR	3 cut(s)	378, 443, 561
AcyI	GRCGYC	2 cut(s)	24, 348
AfaI	GTAC	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	94, 264
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	333, 400
AlwI	GGATC	2 cut(s)	26, 521
AoxI	GGCC	5 cut(s)	278, 378, 443, 507, 561
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	506
BccI	CCATC	5 cut(s)	187, 269, 317, 338, 428
BceAI	ACGGC	4 cut(s)	134, 425, 430, 548
BciT130I	CCWGG	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	333, 400
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	506, 511
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	506, 511
BmsI	GCATC	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	170, 236
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	24, 348
BsaI	GGTCTC	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bse3DI	GCAATG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	511
BseGI	GGATG	4 cut(s)	198, 280, 328, 436
BseJI	GATNNNNATC	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	55, 316
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	5 cut(s)	280, 380, 445, 509, 563
BsiSI	CCGG	1 cut(s)	506
BsmAI	GTCTC	2 cut(s)	333, 400
BsmBI	CGTCTC	1 cut(s)	400
BsnI	GGCC	5 cut(s)	280, 380, 445, 509, 563
Bso31I	GGTCTC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	2 cut(s)	18, 513
BspACI	CCGC	7 cut(s)	54, 79, 121, 147, 181, 384, 450
BspANI	GGCC	5 cut(s)	280, 380, 445, 509, 563
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	26, 521
BspTNI	GGTCTC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	419
BssMI	GATC	2 cut(s)	18, 513
BssNI	GRCGYC	2 cut(s)	24, 348
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	38, 523
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	2 cut(s)	24, 348
BstC8I	GCNNGC	2 cut(s)	256, 382
BstF5I	GGATG	4 cut(s)	198, 280, 328, 436
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	21, 516
BstMAI	GTCTC	2 cut(s)	333, 400
BstMBI	GATC	2 cut(s)	18, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	504, 509
BstUI	CGCG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BsuRI	GGCC	5 cut(s)	280, 380, 445, 509, 563
BtsCI	GGATG	4 cut(s)	198, 280, 328, 436
Cac8I	GCNNGC	2 cut(s)	256, 382
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	2 cut(s)	13, 337
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	1 cut(s)	498
CviJI	RGCY	8 cut(s)	158, 220, 280, 380, 445, 504, 509, 563
CviKI_1	RGCY	8 cut(s)	158, 220, 280, 380, 445, 504, 509, 563
CviQI	GTAC	1 cut(s)	519
DpnI	GATC	2 cut(s)	20, 515
DpnII	GATC	2 cut(s)	18, 513
EaeI	YGGCCR	3 cut(s)	378, 443, 561
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	2 cut(s)	43, 170
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	1 cut(s)	501
FaiI	YATR	3 cut(s)	61, 134, 499
FatI	CATG	1 cut(s)	497
FauI	CCCGC	2 cut(s)	86, 377
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	4 cut(s)	205, 287, 335, 443
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	147
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	5 cut(s)	280, 380, 445, 509, 563
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	2 cut(s)	13, 337
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	2 cut(s)	24, 348
Hin1II	CATG	1 cut(s)	501
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	3 cut(s)	260, 304, 356
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	205, 230
Hpy188III	TCNNGA	4 cut(s)	187, 332, 365, 405
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	6 cut(s)	29, 32, 155, 209, 353, 356
HpyAV	CCTTC	5 cut(s)	100, 117, 238, 264, 420
HpyCH4III	ACNGT	2 cut(s)	38, 523
HpyCH4V	TGCA	3 cut(s)	312, 419, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Hsp92I	GRCGYC	2 cut(s)	24, 348
Hsp92II	CATG	1 cut(s)	501
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	18, 513
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	7 cut(s)	174, 268, 350, 394, 496, 519, 523
LweI	GCATC	1 cut(s)	321
MalI	GATC	2 cut(s)	20, 515
MboI	GATC	2 cut(s)	18, 513
MboII	GAAGA	2 cut(s)	380, 383
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	2 cut(s)	83, 466
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	2 cut(s)	506, 511
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	2 cut(s)	18, 513
NlaIII	CATG	1 cut(s)	501
NlaIV	GGNNCC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 150, 304
PfeI	GAWTC	2 cut(s)	260, 356
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	18, 513
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	506, 511
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	8 cut(s)	119, 180, 222, 378, 460, 477, 534, 581
SfaNI	GCATC	1 cut(s)	321
SgrDI	CGTCGACG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	185, 215
SmoI	CTYRAG	2 cut(s)	185, 215
Sse9I	AATT	2 cut(s)	83, 466
SsiI	CCGC	7 cut(s)	54, 79, 121, 147, 181, 384, 450
StyD4I	CCNGG	2 cut(s)	504, 509
TaaI	ACNGT	2 cut(s)	38, 523
TaqI	TCGA	8 cut(s)	30, 153, 171, 333, 351, 404, 464, 494
TasI	AATT	2 cut(s)	83, 466
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	260, 356
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TspGWI	ACGGA	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.