Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

68464806 .. 68466236

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0558500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTTCCAGATCATAAAGACGTCAAAGTCCCGACGGCGTCGGCTCGCCACGTTTTGATTTGGAGGTTTCAAAAGGGGATCTTTGAAGGAGGTTGTAGATTTGGTCAAATTTTATTCATTTATTTGTATAAGCTGAATGAGCTAATGGAGTCAAAGGGTGGGAAAAAGAAGTCTAGCAGTAGTAAATCCTCATTATTCTACGAAGCTCCCCTAGGATACAGCATTGAAGACGTCAGACCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCATACTCTAACTGCGTGCGAAAGCCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

9.87

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AdoMetDC_leader	PF08132	49 - 100	3.9e-34	S-adenosyl-l-methionine decarboxylase leader peptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AatII	GACGTC	2 cut(s)	24, 234
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	108, 257
AcyI	GRCGYC	3 cut(s)	21, 38, 231
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	71, 86, 227
AluBI	AGCT	4 cut(s)	133, 142, 206, 269
AluI	AGCT	4 cut(s)	133, 142, 206, 269
AlwI	GGATC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	108, 257
AspA2I	CCTAGG	1 cut(s)	211
AvrII	CCTAGG	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	174, 212
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	270
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	234
BsaHI	GRCGYC	3 cut(s)	21, 38, 231
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	10, 78, 263
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	10, 78, 263
BssNI	GRCGYC	3 cut(s)	21, 38, 231
BssT1I	CCWWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	245
BstACI	GRCGYC	3 cut(s)	21, 38, 231
BstC8I	GCNNGC	2 cut(s)	46, 287
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	3 cut(s)	13, 81, 266
BstMBI	GATC	3 cut(s)	10, 78, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	46, 287
CseI	GACGC	1 cut(s)	27
CviJI	RGCY	6 cut(s)	44, 133, 142, 206, 269, 295
CviKI_1	RGCY	6 cut(s)	44, 133, 142, 206, 269, 295
DpnI	GATC	3 cut(s)	12, 80, 265
DpnII	GATC	3 cut(s)	10, 78, 263
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaiI	YATR	3 cut(s)	15, 129, 274
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	174, 212
GluI	GCNGC	1 cut(s)	270
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	3 cut(s)	21, 38, 231
HinfI	GANTC	2 cut(s)	149, 249
Hpy188I	TCNGA	2 cut(s)	236, 263
Hpy188III	TCNNGA	4 cut(s)	8, 31, 253, 300
Hpy99I	CGWCG	2 cut(s)	37, 43
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	3 cut(s)	21, 51, 231
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpySE526I	ACGT	3 cut(s)	21, 51, 231
Hsp92I	GRCGYC	3 cut(s)	21, 38, 231
Kzo9I	GATC	3 cut(s)	10, 78, 263
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	174, 212
MaeII	ACGT	3 cut(s)	21, 51, 231
MalI	GATC	3 cut(s)	12, 80, 265
MboI	GATC	3 cut(s)	10, 78, 263
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	2 cut(s)	108, 257
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	4 cut(s)	57, 83, 199, 249
MspA1I	CMGCKG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	10, 78, 263
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	269
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	10, 78, 263
SchI	GAGTC	1 cut(s)	158
SgeI	CNNG	9 cut(s)	20, 43, 57, 62, 186, 224, 254, 265, 298
Sse9I	AATT	2 cut(s)	108, 257
SspMI	CTAG	2 cut(s)	174, 212
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	3 cut(s)	24, 54, 234
TasI	AATT	2 cut(s)	108, 257
TfiI	GAWTC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	108, 257
XmaJI	CCTAGG	1 cut(s)	211
XspI	CTAG	2 cut(s)	174, 212
ZraI	GACGTC	2 cut(s)	22, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.