Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

10324788 .. 10325746

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCTCACTTCCGCTTCCACTCATCACTTCCTTTCCAAACCCACCGCAATCGAATTCCCATTTCGTCTCAGCTCTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCTATCTCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCTCCTTAACCCTCGAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCCTTAGCCCCCGCAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGGATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAGAAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

187

Amino Acids

19.68

Weight (kDa)

5.51

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	61 - 111	4.9e-14	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	120 - 186	8.4e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	8, 243
AccII	CGCG	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	7 cut(s)	60, 93, 162, 291, 299, 329, 332
AclWI	GGATC	2 cut(s)	192, 205
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	101, 260
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	442, 533
Alw26I	GTCTC	3 cut(s)	119, 274, 556
AlwI	GGATC	2 cut(s)	192, 205
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	293, 296, 308
ApoI	RAATTY	2 cut(s)	101, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AspLEI	GCGC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	3 cut(s)	305, 308, 320
BceAI	ACGGC	2 cut(s)	149, 287
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	119, 274, 556
BfaI	CTAG	2 cut(s)	129, 429
BfmI	CTRYAG	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	6 cut(s)	294, 297, 300, 309, 330, 333
BlsI	GCNGC	6 cut(s)	295, 298, 301, 310, 331, 334
BmiI	GGNNCC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	283, 450
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	130
BseRI	GAGGAG	3 cut(s)	39, 199, 359
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	305, 308, 320
Bsh1236I	CGCG	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	3 cut(s)	119, 274, 556
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	7 cut(s)	60, 93, 162, 291, 299, 329, 332
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	129
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	192, 205
BspQI	GCTCTTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	555
BssMI	GATC	1 cut(s)	197
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	137, 323
Bst6I	CTCTTC	2 cut(s)	49, 127
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	4 cut(s)	116, 283, 450, 519
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	3 cut(s)	119, 274, 556
BstMBI	GATC	1 cut(s)	197
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	8 cut(s)	170, 293, 299, 305, 308, 314, 419, 515
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	305, 308, 320
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BstZI	CGGCCG	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	329
DdeI	CTNAG	4 cut(s)	116, 283, 450, 519
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
DraI	TTTAAA	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	49, 127
EarI	CTCTTC	2 cut(s)	49, 127
EciI	GGCGGA	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	300
Eco52I	CGGCCG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	119
FauI	CCCGC	1 cut(s)	298
FblI	GTMKAC	2 cut(s)	8, 243
Fnu4HI	GCNGC	6 cut(s)	294, 297, 300, 309, 330, 333
Fsp4HI	GCNGC	6 cut(s)	294, 297, 300, 309, 330, 333
FspBI	CTAG	2 cut(s)	129, 429
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	6 cut(s)	294, 297, 300, 309, 330, 333
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	9, 244
HindII	GTYRAC	2 cut(s)	9, 244
HinfI	GANTC	2 cut(s)	13, 526
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	9, 244
Hpy188I	TCNGA	3 cut(s)	197, 202, 384
Hpy188III	TCNNGA	3 cut(s)	176, 187, 530
Hpy8I	GTNNAC	2 cut(s)	9, 244
Hpy99I	CGWCG	5 cut(s)	10, 13, 170, 245, 323
HpyAV	CCTTC	3 cut(s)	436, 458, 482
HpyCH4III	ACNGT	2 cut(s)	137, 323
HpyCH4V	TGCA	3 cut(s)	140, 308, 401
HpyF10VI	GCNNNNNNNGC	8 cut(s)	170, 293, 299, 305, 308, 314, 419, 515
HpyF3I	CTNAG	4 cut(s)	116, 283, 450, 519
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	327
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	197
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	4 cut(s)	178, 316, 346, 454
LpnPI	CCDG	3 cut(s)	189, 327, 525
Lsp1109I	GCAGC	3 cut(s)	305, 308, 320
MaeI	CTAG	2 cut(s)	129, 429
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	7 cut(s)	36, 114, 117, 236, 524, 535, 545
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	3 cut(s)	101, 260, 405
MlyI	GAGTC	2 cut(s)	7, 520
MnlI	CCTC	7 cut(s)	52, 60, 158, 220, 230, 248, 337
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	4 cut(s)	215, 408, 483, 562
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	8 cut(s)	170, 293, 299, 305, 308, 314, 419, 515
NdeII	GATC	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	127
PkrI	GCNGC	6 cut(s)	295, 298, 301, 310, 331, 334
PleI	GAGTC	2 cut(s)	7, 520
PpsI	GAGTC	2 cut(s)	7, 520
PspN4I	GGNNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	197
SalI	GTCGAC	2 cut(s)	7, 242
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	4 cut(s)	215, 408, 483, 562
SatI	GCNGC	6 cut(s)	294, 297, 300, 309, 330, 333
Sau3AI	GATC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	7, 520
SfcI	CTRYAG	1 cut(s)	336
SgrDI	CGTCGACG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	101, 260, 405
SsiI	CCGC	7 cut(s)	60, 93, 162, 291, 299, 329, 332
SspMI	CTAG	2 cut(s)	129, 429
TaaI	ACNGT	2 cut(s)	137, 323
TaqI	TCGA	8 cut(s)	8, 99, 168, 186, 222, 243, 360, 462
TasI	AATT	3 cut(s)	101, 260, 405
TauI	GCSGC	3 cut(s)	302, 332, 335
Tru1I	TTAA	4 cut(s)	215, 408, 483, 562
Tru9I	TTAA	4 cut(s)	215, 408, 483, 562
TseI	GCWGC	3 cut(s)	293, 296, 308
TspDTI	ATGAA	2 cut(s)	390, 519
TspGWI	ACGGA	2 cut(s)	26, 140
XapI	RAATTY	2 cut(s)	101, 260
XmiI	GTMKAC	2 cut(s)	8, 243
XspI	CTAG	2 cut(s)	129, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.