Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Reverse (-)

86621500 .. 86623276

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG647100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCCTCTCTCTCTACTCTCACACTCGGCACTCCTTCTTACCCATCAACCACCACCTCTTCCTTCCCTTCCCACACTCCCAAACCCTCCCTCCAATTCCCCTTCACCCCCCAAAACCCTACCCTCTCCCACCGCGCAACCCACCTCCGCCCCATCGCCGCCACCGCCGCCGCCCCGGAGAAAATCGAGAAGCTCGGGGCCGACATCTCCAGCCTCACTCTCGAGGAGGCCCGCATCCTCGTCGACTACCTCCAGGACAAGCTCGGCGTCTCCGCCGCATCCCTCGCTCCCGCCGCCGCTGTCACCGCGGCCCCCGGAGCCGGCGAGGCGCCCGCCGCGGCGGTGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTCCCGAGCAATGCGAGAATCGCGGTGATTAAGGCGGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCCAAGGAGCTGATTGAAGGTTTGCCCAAGAAATTCAAGGAGGGGGTTTCGAAGGACGATGCCGAAGACGCCAAGAAGCAGCTGGAAGCCGCCGGAGCTAAAGTCGGAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

188

Amino Acids

19.46

Weight (kDa)

5.96

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 111	2.2e-13	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	121 - 187	6.5e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	4 cut(s)	138, 311, 341, 404
AcsI	RAATTY	1 cut(s)	482
AcyI	GRCGYC	3 cut(s)	270, 332, 519
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	445, 467, 487
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	6 cut(s)	196, 265, 435, 460, 532, 548
AluI	AGCT	6 cut(s)	196, 265, 435, 460, 532, 548
Alw26I	GTCTC	1 cut(s)	277
Ama87I	CYCGRG	3 cut(s)	197, 224, 385
AoxI	GGCC	4 cut(s)	201, 231, 312, 450
ApeKI	GCWGC	2 cut(s)	5, 529
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	140, 334
AspS9I	GGNCC	4 cut(s)	201, 232, 313, 382
AsuC2I	CCSGG	2 cut(s)	179, 318
AsuHPI	GGTGA	4 cut(s)	100, 298, 382, 418
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	3 cut(s)	197, 224, 385
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	359, 522
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	55, 164
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	2 cut(s)	179, 318
BcoDI	GTCTC	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	179, 257, 318
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	3 cut(s)	197, 224, 385
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	4 cut(s)	201, 232, 313, 382
BmiI	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
BmrFI	CCNGG	3 cut(s)	179, 257, 318
BmsI	GCATC	3 cut(s)	246, 290, 499
BpiI	GAAGAC	2 cut(s)	359, 522
BpmI	CTGGAG	2 cut(s)	196, 239
Bpu14I	TTCGAA	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	179, 318
BsaHI	GRCGYC	3 cut(s)	270, 332, 519
BsaJI	CCNNGG	5 cut(s)	177, 309, 316, 339, 453
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse118I	RCCGGY	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	5 cut(s)	177, 309, 316, 339, 453
BseGI	GGATG	2 cut(s)	237, 281
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	242, 392
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	4 cut(s)	138, 311, 341, 404
BshFI	GGCC	4 cut(s)	203, 233, 314, 452
BshNI	GGYRCC	1 cut(s)	331
BsiHKCI	CYCGRG	3 cut(s)	197, 224, 385
BsiSI	CCGG	4 cut(s)	179, 318, 324, 543
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	203, 233, 314, 452
BsoBI	CYCGRG	3 cut(s)	197, 224, 385
Bsp119I	TTCGAA	1 cut(s)	500
BspANI	GGCC	4 cut(s)	203, 233, 314, 452
BspFNI	CGCG	4 cut(s)	138, 311, 341, 404
BspLI	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	5 cut(s)	177, 309, 316, 339, 453
BssNI	GRCGYC	3 cut(s)	270, 332, 519
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	3 cut(s)	270, 332, 519
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	235, 325, 336
BstDSI	CCRYGG	2 cut(s)	309, 339
BstF5I	GGATG	2 cut(s)	237, 281
BstFNI	CGCG	4 cut(s)	138, 311, 341, 404
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	2 cut(s)	140, 334
BstMAI	GTCTC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	177, 255, 316
BstUI	CGCG	4 cut(s)	138, 311, 341, 404
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	2 cut(s)	359, 522
BsuRI	GGCC	4 cut(s)	203, 233, 314, 452
BtgI	CCRYGG	2 cut(s)	309, 339
BtgZI	GCGATG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	237, 281
Cac8I	GCNNGC	3 cut(s)	235, 325, 336
CfoI	GCGC	2 cut(s)	140, 334
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	4 cut(s)	201, 232, 313, 382
Cfr42I	CCGCGG	2 cut(s)	312, 342
CseI	GACGC	2 cut(s)	259, 527
DinI	GGCGCC	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	2 cut(s)	140, 265
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	3 cut(s)	197, 224, 385
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	277
FaqI	GGGAC	1 cut(s)	368
FauI	CCCGC	3 cut(s)	242, 301, 343
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	2 cut(s)	224, 268
GlaI	GCGC	2 cut(s)	139, 333
GsuI	CTGGAG	2 cut(s)	196, 239
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	203, 233, 314, 452
HapII	CCGG	4 cut(s)	179, 318, 324, 543
HgaI	GACGC	2 cut(s)	259, 527
HhaI	GCGC	2 cut(s)	140, 334
Hin1I	GRCGYC	3 cut(s)	270, 332, 519
Hin6I	GCGC	2 cut(s)	138, 332
HinP1I	GCGC	2 cut(s)	138, 332
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	4 cut(s)	179, 318, 324, 543
HphI	GGTGA	4 cut(s)	100, 298, 382, 418
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	557, 566
Hpy188III	TCNNGA	3 cut(s)	190, 224, 385
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	248, 368
HpyAV	CCTTC	7 cut(s)	48, 76, 81, 115, 439, 461, 496
HpyCH4IV	ACGT	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	3 cut(s)	270, 332, 519
HspAI	GCGC	2 cut(s)	138, 332
KasI	GGCGCC	1 cut(s)	331
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
KspI	CCGCGG	2 cut(s)	312, 342
LmnI	GCTCC	4 cut(s)	295, 320, 457, 545
LpnPI	CCDG	8 cut(s)	192, 226, 242, 269, 331, 337, 518, 556
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	246, 290, 499
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	54, 364, 527
MluCI	AATT	3 cut(s)	98, 482, 558
Mly113I	GGCGCC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	535
MroNI	GCCGGC	1 cut(s)	323
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	4 cut(s)	302, 311, 341, 532
MspI	CCGG	4 cut(s)	179, 318, 324, 543
MspR9I	CCNGG	3 cut(s)	179, 257, 318
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	4 cut(s)	138, 311, 341, 404
NaeI	GCCGGC	1 cut(s)	325
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	2 cut(s)	179, 318
NgoMIV	GCCGGC	1 cut(s)	323
NlaIV	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
NmeAIII	GCCGAG	2 cut(s)	9, 246
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	255
PluTI	GGCGCC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	5 cut(s)	202, 315, 322, 333, 384
PspPI	GGNCC	4 cut(s)	201, 232, 313, 382
PspPPI	RGGWCCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	532
SacII	CCGCGG	2 cut(s)	312, 342
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	411
Sau96I	GGNCC	4 cut(s)	201, 232, 313, 382
ScrFI	CCNGG	3 cut(s)	179, 257, 318
SfaNI	GCATC	3 cut(s)	246, 290, 499
SfoI	GGCGCC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	2 cut(s)	312, 342
SfuI	TTCGAA	1 cut(s)	500
SgrBI	CCGCGG	2 cut(s)	312, 342
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	98, 482, 558
SspDI	GGCGCC	1 cut(s)	331
StyD4I	CCNGG	3 cut(s)	177, 255, 316
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	5 cut(s)	189, 225, 246, 363, 500
TasI	AATT	3 cut(s)	98, 482, 558
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	5, 529
Tsp45I	GTSAC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.