Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

10323354 .. 10323950

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAGCTACGACTCTTTCCATCGCAACCACAATCCGTTCCTCATCTTTTTCTTCCGGTCTTGCTTCCGCACATCACTTCCCTTCTCGACCCCTCTCGATAGAATTCCCCTTTAGCTTTGGTGTTTCTTCTTCTTCTACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCCGCTGTCAAAACTCCTAAGAAAATTAAGAAGATTGGATCCGAGATCTCGTCTCTAACCCTCGAAGAATCCCGCATCCTCGTCGACTATGTCCAGGACAAGTTCGGTGTTTCAATACTCTTTTCAGCACCTGCTGCAGCGGCTTTACCTCCTCCCCTTGACAATGGTGGTGCGACGGCTTCTGTGGAGAGGCAGACCACATTCGATGTGGTTATCAATGACGTTCCACGTGGTAATCGTATTGCCGTGATCACAGCCATTAGGGCTATGACTAGCTTGTCGTTGAGTGAATCGAAAGAGCTAATAGAAGGGTTTCCGAAGAAGTTTAAAGAAGGCGTGACCAAAGATGAAGCAGAAGAAGACAAGACACAGCTCGAAGAAGCTGGTGCCAAGGTTTCCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

193

Amino Acids

20.59

Weight (kDa)

6.92

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	66 - 110	2.7e-09	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	126 - 192	1e-20	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
AasI	GACNNNNNNGTC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	4 cut(s)	69, 177, 247, 314
AclWI	GGATC	2 cut(s)	207, 220
AcsI	RAATTY	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	6 cut(s)	8, 117, 450, 475, 547, 557
AluI	AGCT	6 cut(s)	8, 117, 450, 475, 547, 557
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	207, 220
AlwNI	CAGNNNCTG	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	5, 308, 311
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	560
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	17, 295, 323
BccI	CCATC	2 cut(s)	29, 174
BceAI	ACGGC	2 cut(s)	366, 404
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	4 cut(s)	6, 309, 312, 315
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	4 cut(s)	7, 310, 313, 316
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	214, 562
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	166, 249
BseMII	CTCAG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	3 cut(s)	17, 295, 323
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	212, 219, 423
Bsp1720I	GCTNAGC	1 cut(s)	143
BspACI	CCGC	4 cut(s)	69, 177, 247, 314
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	214, 562
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	207, 220
BspT107I	GGYRCC	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	212, 219, 423
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	143, 192
BstF5I	GGATG	2 cut(s)	166, 249
BstKTI	GATC	3 cut(s)	215, 222, 426
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	212, 219, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 314, 437
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	17, 295, 323
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	212, 219
BstYI	RGATCY	2 cut(s)	212, 219
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	166, 249
BveI	ACCTGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	143, 192
DpnI	GATC	3 cut(s)	214, 221, 425
DpnII	GATC	3 cut(s)	212, 219, 423
DraI	TTTAAA	1 cut(s)	502
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	564
Eco72I	CACGTG	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	231
FaiI	YATR	3 cut(s)	173, 264, 443
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	6, 309, 312, 315
FokI	GGATG	2 cut(s)	153, 236
Fsp4HI	GCNGC	4 cut(s)	6, 309, 312, 315
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	4 cut(s)	6, 309, 312, 315
HapII	CCGG	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	13, 242, 464
HpaII	CCGG	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	217, 492
Hpy188III	TCNNGA	2 cut(s)	87, 97
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	260, 352
HpyAV	CCTTC	3 cut(s)	93, 476, 500
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	396, 403
HpyCH4V	TGCA	2 cut(s)	155, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 314, 437
HpyF3I	CTNAG	2 cut(s)	143, 192
HpySE526I	ACGT	2 cut(s)	396, 403
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	212, 219, 423
LpnPI	CCDG	5 cut(s)	70, 254, 281, 318, 543
Lsp1109I	GCAGC	3 cut(s)	17, 295, 323
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	2 cut(s)	396, 403
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	214, 221, 425
MboI	GATC	3 cut(s)	212, 219, 423
MflI	RGATCY	2 cut(s)	212, 219
MluCI	AATT	2 cut(s)	104, 198
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	52, 104, 173, 245, 263, 333, 336, 357
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	3 cut(s)	201, 501, 580
MspA1I	CMGCKG	2 cut(s)	179, 314
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	308, 314, 437
NdeII	GATC	3 cut(s)	212, 219, 423
NlaIV	GGNNCC	2 cut(s)	214, 562
NmuCI	GTSAC	1 cut(s)	511
PaqCI	CACCTGC	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	242, 464
PflFI	GACNNNGTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	7, 310, 313, 316
PleI	GAGTC	1 cut(s)	7
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	214, 562
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	212, 219
PsyI	GACNNNGTC	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	201, 501, 580
SatI	GCNGC	4 cut(s)	6, 309, 312, 315
Sau3AI	GATC	3 cut(s)	212, 219, 423
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	269
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	104, 198
SsiI	CCGC	4 cut(s)	69, 177, 247, 314
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	399, 406
TaqI	TCGA	7 cut(s)	88, 98, 237, 258, 378, 467, 549
TasI	AATT	2 cut(s)	104, 198
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	242, 464
Tru1I	TTAA	3 cut(s)	201, 501, 580
Tru9I	TTAA	3 cut(s)	201, 501, 580
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	3 cut(s)	5, 308, 311
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.