Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Forward (+)

1883857 .. 1884423

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1031000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCCACTCTCTCCACACTCACATTGGGCACTCCCTCCTACCCCGCCGCAACCTCCGCCTCCTCCTTCCCCTCCCACTCCCCCAAACCCACCCTCCAATTCCCCTTCAACCCCCAAAACCCTACCCTCACCCACCGCGCCACCCACATACGCCCCCTCGCCGCCGTCGGAGCCCCGGAAAAGATCGAGAAACTCGGCACCGACATCTCCAGCCTCACCCTCGAGGAGGCCCGCATCCTCGTCGACTACCTCCAGGACAAGCTCGGTGTCTCCGCCGCGGCTCTTGCCCCAGCCGCCGCGGTGGCTGTGGCGCCAGGAGCGGCCGAAGGCCCCGCCGTCGTGGAGGAGAAGACGGAGTTCGATGTCGTCATCGAGGACGTGCCGAGCAACGCGAGAATCGCGGTGATTAAGGCGGTGAGGGCGTTGACGAGCCTGGCGCTGAAGGAGGCGAAGGAGTTGATTGAGGGCTTGCCGAAGAAGTTCCGGGAAGGAATTTCGAAAGACGAGGCGGAGGAGGCGAAGAAGCAGCTGGAAGCCGCCGGGGCGAAGATTAACATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

189

Amino Acids

19.65

Weight (kDa)

5.69

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 110	7.7e-14	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	121 - 187	1.3e-24	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	200, 313
AccBSI	CCGCTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	5 cut(s)	141, 281, 302, 395, 404
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	3 cut(s)	255, 316, 435
AluBI	AGCT	2 cut(s)	265, 532
AluI	AGCT	2 cut(s)	265, 532
Alw26I	GTCTC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	231, 324, 331
ApeKI	GCWGC	2 cut(s)	5, 529
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	3 cut(s)	143, 316, 442
AspS9I	GGNCC	2 cut(s)	232, 332
AsuC2I	CCSGG	3 cut(s)	179, 488, 544
AsuHPI	GGTGA	4 cut(s)	124, 211, 418, 430
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	200, 313
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	541
BceAI	ACGGC	2 cut(s)	152, 323
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	3 cut(s)	257, 318, 437
BcnI	CCSGG	3 cut(s)	179, 488, 544
BcoDI	GTCTC	1 cut(s)	277
BfoI	RGCGCY	2 cut(s)	317, 443
BglI	GCCNNNNNGGC	2 cut(s)	305, 545
Bme1390I	CCNGG	6 cut(s)	179, 257, 318, 437, 488, 544
BmeT110I	CYCGRG	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	232, 332
BmiI	GGNNCC	4 cut(s)	175, 202, 315, 334
BmrFI	CCNGG	6 cut(s)	179, 257, 318, 437, 488, 544
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	196, 239
Bpu14I	TTCGAA	1 cut(s)	500
BpuMI	CCSGG	3 cut(s)	179, 488, 544
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	177, 279, 300, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	3 cut(s)	257, 318, 437
BseDI	CCNNGG	4 cut(s)	177, 279, 300, 543
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseRI	GAGGAG	4 cut(s)	55, 242, 362, 530
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	5 cut(s)	141, 281, 302, 395, 404
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	233, 326, 333
BshNI	GGYRCC	2 cut(s)	200, 313
BsiEI	CGRYCG	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	179, 487, 543
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	233, 326, 333
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	35, 178
Bsp143I	GATC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	233, 326, 333
BspFNI	CGCG	5 cut(s)	141, 281, 302, 395, 404
BspLI	GGNNCC	4 cut(s)	175, 202, 315, 334
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	200, 313
BsrBI	CCGCTC	1 cut(s)	323
BssECI	CCNNGG	4 cut(s)	177, 279, 300, 543
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	257, 318, 437
BstACI	GRCGYC	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	235, 473
BstDSI	CCRYGG	2 cut(s)	279, 300
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	5 cut(s)	141, 281, 302, 395, 404
BstH2I	RGCGCY	2 cut(s)	317, 443
BstHHI	GCGC	3 cut(s)	143, 316, 442
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	186
BstMCI	CGRYCG	1 cut(s)	327
BstNI	CCWGG	3 cut(s)	257, 318, 437
BstSCI	CCNGG	6 cut(s)	177, 255, 316, 435, 486, 542
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	5 cut(s)	141, 281, 302, 395, 404
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	359
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	233, 326, 333
BtgI	CCRYGG	2 cut(s)	279, 300
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	235, 473
CfoI	GCGC	3 cut(s)	143, 316, 442
Cfr13I	GGNCC	2 cut(s)	232, 332
Cfr42I	CCGCGG	2 cut(s)	282, 303
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	324
EagI	CGGCCG	1 cut(s)	324
EciI	GGCGGA	3 cut(s)	49, 265, 527
EclXI	CGGCCG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	178
Eco52I	CGGCCG	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	255, 316, 435
EcoT38I	GRGCYC	1 cut(s)	178
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
FaiI	YATR	1 cut(s)	152
FauI	CCCGC	3 cut(s)	55, 242, 343
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	178
GlaI	GCGC	3 cut(s)	142, 315, 441
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	196, 239
HaeII	RGCGCY	2 cut(s)	317, 443
HaeIII	GGCC	3 cut(s)	233, 326, 333
HapII	CCGG	3 cut(s)	179, 487, 543
HhaI	GCGC	3 cut(s)	143, 316, 442
Hin1I	GRCGYC	1 cut(s)	314
Hin6I	GCGC	3 cut(s)	141, 314, 440
HinP1I	GCGC	3 cut(s)	141, 314, 440
HincII	GTYRAC	2 cut(s)	247, 429
HindII	GTYRAC	2 cut(s)	247, 429
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	3 cut(s)	179, 487, 543
HphI	GGTGA	4 cut(s)	124, 211, 418, 430
Hpy166II	GTNNAC	2 cut(s)	247, 429
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	247, 429
Hpy99I	CGWCG	3 cut(s)	173, 248, 344
HpyAV	CCTTC	6 cut(s)	79, 118, 323, 439, 448, 485
HpyCH4IV	ACGT	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	314
HspAI	GCGC	3 cut(s)	141, 314, 440
KasI	GGCGCC	1 cut(s)	313
KspI	CCGCGG	2 cut(s)	282, 303
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	173, 320
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	381
MalI	GATC	1 cut(s)	188
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	1 cut(s)	186
MboII	GAAGA	4 cut(s)	364, 490, 535, 562
MhlI	GDGCHC	2 cut(s)	35, 178
MluCI	AATT	2 cut(s)	101, 495
Mly113I	GGCGCC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	3 cut(s)	411, 555, 565
MspA1I	CMGCKG	3 cut(s)	281, 302, 532
MspI	CCGG	3 cut(s)	179, 487, 543
MspR9I	CCNGG	6 cut(s)	179, 257, 318, 437, 488, 544
MvaI	CCWGG	3 cut(s)	257, 318, 437
MvnI	CGCG	5 cut(s)	141, 281, 302, 395, 404
NarI	GGCGCC	1 cut(s)	314
NciI	CCSGG	3 cut(s)	179, 488, 544
NdeII	GATC	1 cut(s)	186
NlaIV	GGNNCC	4 cut(s)	175, 202, 315, 334
NmeAIII	GCCGAG	2 cut(s)	177, 411
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	2 cut(s)	255, 486
PluTI	GGCGCC	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	255, 316, 435
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	3 cut(s)	255, 316, 435
PspN4I	GGNNCC	4 cut(s)	175, 202, 315, 334
PspPI	GGNCC	2 cut(s)	232, 332
PspXI	VCTCGAGB	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	532
SacII	CCGCGG	2 cut(s)	282, 303
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	411, 555, 565
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	232, 332
ScrFI	CCNGG	6 cut(s)	179, 257, 318, 437, 488, 544
SduI	GDGCHC	2 cut(s)	35, 178
SetI	ASST	5 cut(s)	59, 255, 267, 384, 534
SfaNI	GCATC	1 cut(s)	246
SfoI	GGCGCC	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	2 cut(s)	282, 303
SfuI	TTCGAA	1 cut(s)	500
SgrBI	CCGCGG	2 cut(s)	282, 303
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	101, 495
SspDI	GGCGCC	1 cut(s)	313
StyD4I	CCNGG	6 cut(s)	177, 255, 316, 435, 486, 542
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	6 cut(s)	189, 225, 246, 363, 375, 500
TasI	AATT	2 cut(s)	101, 495
TauI	GCSGC	8 cut(s)	53, 167, 281, 284, 299, 302, 326, 542
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	3 cut(s)	411, 555, 565
Tru9I	TTAA	3 cut(s)	411, 555, 565
TseI	GCWGC	2 cut(s)	5, 529
TspGWI	ACGGA	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.