Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Reverse (-)

37815803 .. 37816366

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAGCCTCTCTCTCTACTCTCACACTCACCACTCCTTCTTACGCCGCAACCACCTCCTCCTTCCCCTCCCACACTCCCAAACCCTCCCTCCAATTCCCCTTCTCCCCTCACCAAAACCCCACCCTCTCCCACCGCGCCACCCACCTCCGCCCCGTCGCCGCCGTCGCCGCCCCGGAGAAAATCGAGAAGCTCGGCGCCGACATCTCCAGCCTCACTCTCGAGGAGGCCCGCGTCCTCGTCGACTACCTCCAGGAGAAGCTCGGCGTCTCCGCCGCCGCCCTCGCCCCCGCCGCCGCGGTCGCCGCGGCCCCCGGCGCGGGCGACGCGGCGGCCGTGGTGGAGGAGAAGACGGAGTTCGATGTGGTGATTGAGGACGTGCCGAGCAATGCCAGAATCGCGGTGATTAAGGCGGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCCAAGGAGCTTATTGAAGGGCTGCCCAAGAAGTTTAAGGAGGGAGTGTCTAAGGATGATGCTGAGGAAGCCAAGAAGCAGCTAGAAGCGGCTGGAGCTAAAGTTGGAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

188

Amino Acids

19.4

Weight (kDa)

5.84

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	61 - 110	9.4e-14	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	120 - 186	4.9e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	7 cut(s)	138, 234, 299, 308, 320, 329, 401
AcoI	YGGCCR	1 cut(s)	333
AcyI	GRCGYC	2 cut(s)	198, 267
AfiI	CCNNNNNNNGG	2 cut(s)	319, 320
AgsI	TTSAA	2 cut(s)	442, 464
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	6 cut(s)	193, 262, 432, 457, 529, 545
AluI	AGCT	6 cut(s)	193, 262, 432, 457, 529, 545
Alw26I	GTCTC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	4 cut(s)	228, 309, 333, 447
ApeKI	GCWGC	3 cut(s)	5, 469, 526
AspLEI	GCGC	3 cut(s)	140, 200, 320
AspS9I	GGNCC	2 cut(s)	229, 310
AsuC2I	CCSGG	2 cut(s)	176, 315
AsuHPI	GGTGA	4 cut(s)	22, 104, 379, 415
AvaI	CYCGRG	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	3 cut(s)	17, 456, 538
BceAI	ACGGC	2 cut(s)	149, 320
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	176, 315
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	176, 254, 315
BmeT110I	CYCGRG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	229, 310
BmiI	GGNNCC	2 cut(s)	199, 312
BmrFI	CCNGG	3 cut(s)	176, 254, 315
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	3 cut(s)	193, 236, 561
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	176, 315
BsaHI	GRCGYC	2 cut(s)	198, 267
BsaJI	CCNNGG	6 cut(s)	174, 297, 306, 313, 336, 450
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 479, 509, 534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 320
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	6 cut(s)	174, 297, 306, 313, 336, 450
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	319, 320
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	501
BseRI	GAGGAG	3 cut(s)	49, 239, 359
BseX3I	CGGCCG	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	17, 456, 538
Bsh1236I	CGCG	7 cut(s)	138, 234, 299, 308, 320, 329, 401
Bsh1285I	CGRYCG	2 cut(s)	303, 336
BshFI	GGCC	4 cut(s)	230, 311, 335, 449
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	2 cut(s)	303, 336
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	176, 315
BslI	CCNNNNNNNGG	2 cut(s)	319, 320
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsnI	GGCC	4 cut(s)	230, 311, 335, 449
BsoBI	CYCGRG	1 cut(s)	221
BspANI	GGCC	4 cut(s)	230, 311, 335, 449
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	7 cut(s)	138, 234, 299, 308, 320, 329, 401
BspLI	GGNNCC	2 cut(s)	199, 312
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	394
BssECI	CCNNGG	6 cut(s)	174, 297, 306, 313, 336, 450
BssNI	GRCGYC	2 cut(s)	198, 267
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	198, 267
BstC8I	GCNNGC	2 cut(s)	232, 322
BstDEI	CTNAG	2 cut(s)	498, 510
BstDSI	CCRYGG	3 cut(s)	297, 306, 336
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	7 cut(s)	138, 234, 299, 308, 320, 329, 401
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	3 cut(s)	140, 200, 320
BstMAI	GTCTC	1 cut(s)	274
BstMCI	CGRYCG	2 cut(s)	303, 336
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	174, 252, 313
BstUI	CGCG	7 cut(s)	138, 234, 299, 308, 320, 329, 401
BstV1I	GCAGC	3 cut(s)	17, 456, 538
BstV2I	GAAGAC	1 cut(s)	356
BstZI	CGGCCG	1 cut(s)	333
BsuRI	GGCC	4 cut(s)	230, 311, 335, 449
BtgI	CCRYGG	3 cut(s)	297, 306, 336
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	232, 322
CfoI	GCGC	3 cut(s)	140, 200, 320
Cfr13I	GGNCC	2 cut(s)	229, 310
Cfr42I	CCGCGG	2 cut(s)	300, 309
CseI	GACGC	3 cut(s)	223, 256, 335
DdeI	CTNAG	2 cut(s)	498, 510
DinI	GGCGCC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
EciI	GGCGGA	2 cut(s)	140, 262
EclXI	CGGCCG	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	450
Eco52I	CGGCCG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	450
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	274
FauI	CCCGC	3 cut(s)	239, 298, 313
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	515
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	3 cut(s)	139, 199, 319
GsuI	CTGGAG	3 cut(s)	193, 236, 561
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	230, 311, 335, 449
HapII	CCGG	2 cut(s)	176, 315
HgaI	GACGC	3 cut(s)	223, 256, 335
HhaI	GCGC	3 cut(s)	140, 200, 320
Hin1I	GRCGYC	2 cut(s)	198, 267
Hin6I	GCGC	3 cut(s)	138, 198, 318
HinP1I	GCGC	3 cut(s)	138, 198, 318
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	2 cut(s)	176, 315
HphI	GGTGA	4 cut(s)	22, 104, 379, 415
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	2 cut(s)	187, 221
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	4 cut(s)	161, 170, 245, 329
HpyAV	CCTTC	5 cut(s)	48, 73, 112, 436, 458
HpyCH4IV	ACGT	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	498, 510
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	2 cut(s)	198, 267
HspAI	GCGC	3 cut(s)	138, 198, 318
KasI	GGCGCC	1 cut(s)	197
KspI	CCGCGG	2 cut(s)	300, 309
LmnI	GCTCC	2 cut(s)	454, 542
LpnPI	CCDG	7 cut(s)	189, 223, 239, 266, 328, 406, 525
Lsp1109I	GCAGC	3 cut(s)	17, 456, 538
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	378
MboII	GAAGA	1 cut(s)	361
MluCI	AATT	2 cut(s)	95, 555
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	532
MseI	TTAA	2 cut(s)	408, 483
MspA1I	CMGCKG	2 cut(s)	299, 308
MspI	CCGG	2 cut(s)	176, 315
MspR9I	CCNGG	3 cut(s)	176, 254, 315
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	7 cut(s)	138, 234, 299, 308, 320, 329, 401
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	176, 315
NlaIV	GGNNCC	2 cut(s)	199, 312
NmeAIII	GCCGAG	3 cut(s)	174, 243, 408
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 434
PfeI	GAWTC	1 cut(s)	396
PfoI	TCCNGGA	1 cut(s)	252
PluTI	GGCGCC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	199, 312
PspPI	GGNCC	2 cut(s)	229, 310
SacII	CCGCGG	2 cut(s)	300, 309
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	408, 483
Sau96I	GGNCC	2 cut(s)	229, 310
ScrFI	CCNGG	3 cut(s)	176, 254, 315
SfaNI	GCATC	1 cut(s)	496
SfoI	GGCGCC	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	221
Sfr303I	CCGCGG	2 cut(s)	300, 309
SgrBI	CCGCGG	2 cut(s)	300, 309
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	95, 555
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	174, 252, 313
StyI	CCWWGG	1 cut(s)	450
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	4 cut(s)	186, 222, 243, 360
TasI	AATT	2 cut(s)	95, 555
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	408, 483
Tru9I	TTAA	2 cut(s)	408, 483
TseI	GCWGC	3 cut(s)	5, 469, 526
TspGWI	ACGGA	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.