Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009130

Physical Location & Seq

Genomic Coordinates Reverse (-)

25895974 .. 25896810

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCCTCTCTCTCTACACTCACATTGGGCACCCCATCTTATCTCAACACACCCGCGACTTCCTCTTTTCCTCCGAACACCCCCAAAACCACCCTCCAATTCCCCTTCAACCCCCAAAACCCTAGCCTCACCCACCGTGCCACGCACCTCCGTCCCCTCGCCGCCGTCGAAGCCCCCGAGAAGATTGAGAAGCTCGGCGCCGATATCTCCAGCCTCACCCTCGAGGAGGCTCGCATCCTCGTCGACTTCCTCCAAGACAAGCTTGGCGTCTCCGCCGCAGCTCTGGCTCCAGCCGCCGCGGTGGCCGCGGCGCCAGGAGCCGCCGAGGGACCTGCCGTTGTGGAGGAGAAGACGGAGTTCGACGTGGTCATCGAAGAGGTGCCGAGCAACGCAAGAATTGCGGTGATTAAGGCGGTTAGGGCGTTGACGAGCTTGGCGCTGAAGGAGGCCAAGGAGCTGATTGAGGGCTTGCCTAAGAAATTCAGAGAAGGGATTTCCAAGGACGAAGCCGATGAGGCGAAGAAGCAGCTGGAAGAGGCTGGGGCTAAGGTTGCCATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

189

Amino Acids

19.73

Weight (kDa)

5.2

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27830 AT3G27830 AT3G27840 AT3G27850
fragaria_vesca	FvH4_6g50910
malus_domestica	MD09G1031000.v1.1 MD17G1032900.v1.1
prunus_persica	Prupe.3G286600_v2.0.a1
pyrus_communis	pycom05g17000 pycom111g02470 pycom17g03030
rosa_chinensis	RchiOBHm_Chr2g0172281
rosa_laevigata	RLG00000022102
rosa_multiflora	Rmu_sc0015865.1_g000001 Rmu_ssc0000103.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080010
rosa_rugosa	Rorug02G0558500
rosa_samantha	Rh2AG633500 Rh2BG647100 Rh2CG614000 Rh2DG661900
rosa_wichuraiana	Rw2G052450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	343
AccB1I	GGYRCC	4 cut(s)	32, 200, 313, 382
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	3 cut(s)	59, 302, 311
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	3 cut(s)	201, 270, 314
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	6 cut(s)	196, 265, 284, 435, 460, 532
AluI	AGCT	6 cut(s)	196, 265, 284, 435, 460, 532
Alw26I	GTCTC	1 cut(s)	277
Ama87I	CYCGRG	2 cut(s)	179, 224
AoxI	GGCC	2 cut(s)	306, 450
ApeKI	GCWGC	3 cut(s)	5, 281, 529
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	3 cut(s)	203, 316, 442
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	124, 211, 418
AvaI	CYCGRG	2 cut(s)	179, 224
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	4 cut(s)	32, 200, 313, 382
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	293, 541
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	152, 323
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 317, 351
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	3 cut(s)	204, 317, 443
BfuAI	ACCTGC	1 cut(s)	343
BglI	GCCNNNNNGGC	2 cut(s)	305, 518
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	2 cut(s)	179, 224
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	7 cut(s)	34, 202, 291, 315, 322, 333, 384
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	196, 276
Bpu10I	CCTNAGC	1 cut(s)	549
BsaHI	GRCGYC	3 cut(s)	201, 270, 314
BsaJI	CCNNGG	5 cut(s)	300, 309, 327, 453, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	5 cut(s)	300, 309, 327, 453, 501
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	242, 362
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	293, 541
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	3 cut(s)	59, 302, 311
BshFI	GGCC	2 cut(s)	308, 452
BshNI	GGYRCC	4 cut(s)	32, 200, 313, 382
BsiHKCI	CYCGRG	2 cut(s)	179, 224
BslFI	GGGAC	2 cut(s)	141, 345
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	141, 345
BsnI	GGCC	2 cut(s)	308, 452
BsoBI	CYCGRG	2 cut(s)	179, 224
Bsp1286I	GDGCHC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	308, 452
BspFNI	CGCG	3 cut(s)	59, 302, 311
BspLI	GGNNCC	7 cut(s)	34, 202, 291, 315, 322, 333, 384
BspMI	ACCTGC	1 cut(s)	343
BspT107I	GGYRCC	4 cut(s)	32, 200, 313, 382
BssECI	CCNNGG	5 cut(s)	300, 309, 327, 453, 501
BssNI	GRCGYC	3 cut(s)	201, 270, 314
BssT1I	CCWWGG	2 cut(s)	453, 501
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	372, 531
BstACI	GRCGYC	3 cut(s)	201, 270, 314
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	235, 473
BstDEI	CTNAG	2 cut(s)	477, 549
BstDSI	CCRYGG	2 cut(s)	300, 309
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	3 cut(s)	59, 302, 311
BstH2I	RGCGCY	3 cut(s)	204, 317, 443
BstHHI	GCGC	3 cut(s)	203, 316, 442
BstMAI	GTCTC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	3 cut(s)	59, 302, 311
BstV1I	GCAGC	2 cut(s)	293, 541
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	308, 452
BtgI	CCRYGG	2 cut(s)	300, 309
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	235, 473
CfoI	GCGC	3 cut(s)	203, 316, 442
Cfr13I	GGNCC	1 cut(s)	332
Cfr42I	CCGCGG	2 cut(s)	303, 312
CseI	GACGC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	477, 549
DinI	GGCGCC	2 cut(s)	202, 315
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	372, 531
EarI	CTCTTC	2 cut(s)	372, 531
EciI	GGCGGA	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	453, 501
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	464
Eco88I	CYCGRG	2 cut(s)	179, 224
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	453, 501
EgeI	GGCGCC	2 cut(s)	202, 315
EheI	GGCGCC	2 cut(s)	202, 315
ErhI	CCWWGG	2 cut(s)	453, 501
Esp3I	CGTCTC	1 cut(s)	277
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	141, 345
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	224
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	3 cut(s)	202, 315, 441
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	2 cut(s)	196, 276
HaeII	RGCGCY	3 cut(s)	204, 317, 443
HaeIII	GGCC	2 cut(s)	308, 452
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	3 cut(s)	203, 316, 442
Hin1I	GRCGYC	3 cut(s)	201, 270, 314
Hin6I	GCGC	3 cut(s)	201, 314, 440
HinP1I	GCGC	3 cut(s)	201, 314, 440
HincII	GTYRAC	2 cut(s)	247, 429
HindII	GTYRAC	2 cut(s)	247, 429
HindIII	AAGCTT	1 cut(s)	263
HphI	GGTGA	3 cut(s)	124, 211, 418
Hpy166II	GTNNAC	2 cut(s)	247, 429
Hpy188I	TCNGA	2 cut(s)	78, 488
Hpy8I	GTNNAC	2 cut(s)	247, 429
Hpy99I	CGWCG	3 cut(s)	173, 248, 368
HpyAV	CCTTC	3 cut(s)	118, 439, 485
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	477, 549
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	3 cut(s)	201, 270, 314
HspAI	GCGC	3 cut(s)	201, 314, 440
KasI	GGCGCC	2 cut(s)	200, 313
KspI	CCGCGG	2 cut(s)	303, 312
LmnI	GCTCC	3 cut(s)	295, 320, 457
LpnPI	CCDG	8 cut(s)	226, 272, 303, 306, 330, 348, 518, 528
Lsp1109I	GCAGC	2 cut(s)	293, 541
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	366
MboII	GAAGA	5 cut(s)	196, 364, 389, 535, 548
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	101, 399, 482
Mly113I	GGCGCC	2 cut(s)	201, 314
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	3 cut(s)	302, 311, 532
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	3 cut(s)	59, 302, 311
NarI	GGCGCC	2 cut(s)	201, 314
NlaIV	GGNNCC	7 cut(s)	34, 202, 291, 315, 322, 333, 384
NmeAIII	GCCGAG	3 cut(s)	177, 352, 411
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 177, 372
PflFI	GACNNNGTC	1 cut(s)	368
PluTI	GGCGCC	2 cut(s)	204, 317
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	7 cut(s)	34, 202, 291, 315, 322, 333, 384
PspPI	GGNCC	1 cut(s)	332
PspPPI	RGGWCCY	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	532
SacII	CCGCGG	2 cut(s)	303, 312
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	411
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	246
SfoI	GGCGCC	2 cut(s)	202, 315
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	2 cut(s)	303, 312
SgrBI	CCGCGG	2 cut(s)	303, 312
SinI	GGWCC	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	101, 399, 482
SspDI	GGCGCC	2 cut(s)	200, 313
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	453, 501
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	5 cut(s)	171, 225, 246, 363, 375
TasI	AATT	3 cut(s)	101, 399, 482
TauI	GCSGC	7 cut(s)	167, 281, 299, 302, 311, 314, 326
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	3 cut(s)	5, 281, 529
TspGWI	ACGGA	2 cut(s)	143, 371
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.