AT3G27880

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011712
Physical Location & Seq
Forward (+)
10338148 .. 10339528
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27880.1

Sequence Viewer

Length: 729 bp
ATGGAGAAAGACGATGCAACGGCGTCGTTTTCACCTAGCTTCAGTACTTATTCCGGCGATAGACTCGTCGAAATCGCCGAACGAGTCTGTTACAAAGAGAAATCAGACGCCGAATTCGAGTTTTCGACGGCGGCGACTTCTTCTTCCGGTGACGGTGGACTAGTTTTCCCTGTATTTAACAAGAATCTAATCTCCGGAGATGTTTCTCCGGAGAAAGTAATTCCGTTGAAGGATCTATTCCTCCGTGAACGTAACGATCAACAACCACCGCAACAAACATACTCATCGTCTTCCGACGAAGAAGAAGAAGACGACGAGTTTGATTCGATCCCGAGCGAGATCTATTGTCCATGGACACCAGCGAGATCTACGGCGGATATGTCACCAAGTGGAGGATGTAGAAAAAGCAAATCTACAGGATCATCATCAACCTCTACATGGTCAACGAAACGATGGCGTTTGAGAGACTTTCTCAAGAGAAGTAAAAGTGATGGTAAACAATCACTTAAATTCTTGAACCCAACAAACAGAGATGATGATGATGAATCTTCCAAATCGAAGAAGAAAGTTTCAGTTTCAGTTACAGTTTCTGCACATGAGAAGTTTTATCTGAGGAATAAAGCGATTAAAGAAGAAGACAAGAGAAAGTCATATTTACCGTACAAGCAAGATCTTGTTGGTCTTTTTTCTAATATTCATCGTTATGGCAAAACTTTTCCTCCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

6.23

Isoelectric Point (pI)

65.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 88 - 220 1.7e-20 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 194, 208
AciI CCGC 3 cut(s) 131, 269, 374
AclWI GGATC 3 cut(s) 240, 322, 427
AcsI RAATTY 2 cut(s) 113, 509
AcuI CTGAAG 1 cut(s) 25
AcyI GRCGYC 2 cut(s) 23, 108
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 46, 662
AfiI CCNNNNNNNGG 2 cut(s) 392, 438
AgsI TTSAA 2 cut(s) 229, 517
AhlI ACTAGT 1 cut(s) 160
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 3 cut(s) 240, 322, 427
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 331
Aor13HI TCCGGA 2 cut(s) 194, 208
ApoI RAATTY 2 cut(s) 113, 509
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 302, 334
AsuHPI GGTGA 3 cut(s) 24, 161, 375
AvaI CYCGRG 1 cut(s) 331
BbsI GAAGAC 3 cut(s) 282, 315, 642
BccI CCATC 2 cut(s) 447, 485
BceAI ACGGC 3 cut(s) 36, 144, 387
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BcoDI GTCTC 1 cut(s) 459
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 2 cut(s) 36, 161
BfmI CTRYAG 1 cut(s) 414
BglII AGATCT 3 cut(s) 339, 365, 670
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 331
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 3 cut(s) 282, 315, 642
BplI GAGNNNNNCTC 2 cut(s) 456, 488
BpuEI CTTGAG 1 cut(s) 458
BsaBI GATNNNNATC 1 cut(s) 424
BsaHI GRCGYC 2 cut(s) 23, 108
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 3 cut(s) 146, 194, 208
BsaXI ACNNNNNCTCC 1 cut(s) 703
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 438
Bse8I GATNNNNATC 1 cut(s) 424
BseAI TCCGGA 2 cut(s) 194, 208
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 401
BseJI GATNNNNATC 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 392, 438
BseMII CTCAG 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 4 cut(s) 54, 147, 195, 209
BslI CCNNNNNNNGG 2 cut(s) 392, 438
BsmAI GTCTC 1 cut(s) 459
BsoBI CYCGRG 1 cut(s) 331
Bsp13I TCCGGA 2 cut(s) 194, 208
Bsp143I GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 3 cut(s) 131, 269, 374
BspCNI CTCAG 1 cut(s) 603
BspEI TCCGGA 2 cut(s) 194, 208
BspPI GGATC 3 cut(s) 240, 322, 427
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
BssNI GRCGYC 2 cut(s) 23, 108
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 155, 586, 660
BstACI GRCGYC 2 cut(s) 23, 108
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 7 cut(s) 235, 259, 330, 342, 368, 422, 673
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
BstSFI CTRYAG 1 cut(s) 414
BstV2I GAAGAC 3 cut(s) 282, 315, 642
BstX2I RGATCY 4 cut(s) 232, 339, 365, 670
BstYI RGATCY 4 cut(s) 232, 339, 365, 670
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 401
CaiI CAGNNNCTG 1 cut(s) 590
CseI GACGC 2 cut(s) 12, 116
Csp6I GTAC 2 cut(s) 45, 661
CviAII CATG 3 cut(s) 351, 438, 596
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
CviQI GTAC 2 cut(s) 45, 661
DdeI CTNAG 1 cut(s) 611
DpnI GATC 7 cut(s) 234, 258, 329, 341, 367, 421, 672
DpnII GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
DraIII CACNNNGTG 1 cut(s) 389
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 3 cut(s) 354, 441, 599
FaiI YATR 7 cut(s) 280, 352, 380, 439, 597, 652, 705
FatI CATG 3 cut(s) 350, 437, 595
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 36, 161
GluI GCNGC 1 cut(s) 132
HapII CCGG 4 cut(s) 54, 147, 195, 209
HgaI GACGC 2 cut(s) 12, 116
Hin1I GRCGYC 2 cut(s) 23, 108
Hin1II CATG 3 cut(s) 354, 441, 599
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 5 cut(s) 63, 84, 184, 323, 545
HpaII CCGG 4 cut(s) 54, 147, 195, 209
HphI GGTGA 3 cut(s) 24, 161, 375
Hpy166II GTNNAC 4 cut(s) 158, 248, 444, 497
Hpy188I TCNGA 3 cut(s) 106, 295, 612
Hpy188III TCNNGA 5 cut(s) 195, 209, 331, 475, 514
Hpy8I GTNNAC 4 cut(s) 158, 248, 444, 497
Hpy99I CGWCG 5 cut(s) 28, 71, 130, 299, 317
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 3 cut(s) 155, 586, 660
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 17, 593
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 1 cut(s) 250
Hsp92I GRCGYC 2 cut(s) 23, 108
Hsp92II CATG 3 cut(s) 354, 441, 599
Kpn2I TCCGGA 2 cut(s) 194, 208
Kzo9I GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
LpnPI CCDG 7 cut(s) 67, 160, 183, 208, 222, 372, 402
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 36, 161
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 5 cut(s) 89, 149, 251, 381, 580
MalI GATC 7 cut(s) 234, 258, 329, 341, 367, 421, 672
MboI GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
MflI RGATCY 4 cut(s) 232, 339, 365, 670
MluCI AATT 3 cut(s) 113, 219, 509
MlyI GAGTC 2 cut(s) 57, 93
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 5 cut(s) 251, 386, 442, 606, 729
MroI TCCGGA 2 cut(s) 194, 208
MseI TTAA 3 cut(s) 177, 507, 627
MslI CAYNNNNRTG 1 cut(s) 702
MspI CCGG 4 cut(s) 54, 147, 195, 209
NcoI CCATGG 1 cut(s) 350
NdeII GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
NlaIII CATG 3 cut(s) 354, 441, 599
NmuCI GTSAC 2 cut(s) 149, 381
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 114, 131
PfeI GAWTC 3 cut(s) 184, 323, 545
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 57, 92
PpsI GAGTC 2 cut(s) 57, 92
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 4 cut(s) 232, 339, 365, 670
RsaI GTAC 2 cut(s) 46, 662
RsaNI GTAC 2 cut(s) 45, 661
RseI CAYNNNNRTG 1 cut(s) 702
SaqAI TTAA 3 cut(s) 177, 507, 627
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 7 cut(s) 232, 256, 327, 339, 365, 419, 670
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 2 cut(s) 57, 93
SetI ASST 4 cut(s) 37, 41, 253, 434
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 3 cut(s) 113, 219, 509
SsiI CCGC 3 cut(s) 131, 269, 374
SspI AATATT 1 cut(s) 694
SspMI CTAG 2 cut(s) 36, 161
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 3 cut(s) 155, 586, 660
TaiI ACGT 1 cut(s) 253
TaqI TCGA 5 cut(s) 69, 117, 125, 326, 557
TasI AATT 3 cut(s) 113, 219, 509
TatI WGTACW 1 cut(s) 44
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 184, 323, 545
Tru1I TTAA 3 cut(s) 177, 507, 627
Tru9I TTAA 3 cut(s) 177, 507, 627
TseFI GTSAC 2 cut(s) 149, 381
Tsp45I GTSAC 2 cut(s) 149, 381
TspDTI ATGAA 2 cut(s) 558, 686
TspGWI ACGGA 3 cut(s) 213, 233, 711
XapI RAATTY 2 cut(s) 113, 509
XspI CTAG 2 cut(s) 36, 161
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.