Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011712

Physical Location & Seq

Genomic Coordinates Reverse (-)

54097128 .. 54099351

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAAAGTGTTGACAATATAAATCTCACATGGGAAAATGGGGACCTTTGCACGAGACCAAAGAGTACCGTGTATGAAGAAGAAGAAGATAACCACTTCGAGTTCGTGTCGTTTCAGAAATCTACCGACGAGGTTTTCTTCGGCGACAACACCCGGATCGGTCCGGTTTTCTGGGTCTTCAACCGCCAATTTATTAGTCAACGGGATCTAATCGACACCGTGCCGACGTTGTCGTCGTCCACGCCCGCCTATTTCGTCTCCTTCCCATTGCAATTTGCAAGAAGAGCAAGTCGACTGGAGAAAGAGATAAACCAGACTCATCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

109

Amino Acids

12.79

Weight (kDa)

5.1

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27880
fragaria_vesca	FvH4_6g50800
malus_domestica	MD09G1032200.v1.1
prunus_persica	Prupe.3G285800_v2.0.a1
pyrus_communis	pycom111g02550 pycom17g03100
rosa_chinensis	RchiOBHm_Chr2g0172191
rosa_laevigata	RLG00000022091 RLG00000035990
rosa_multiflora	Rmu_ssc0000252.1_g000049
rosa_roxburghii	Rroxscaffold_2G00121460
rosa_rugosa	Rorug02G0556900
rosa_samantha	Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana	Rw2G052360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	184, 246
AclWI	GGATC	2 cut(s)	164, 213
AfaI	GTAC	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	49, 262
AlwI	GGATC	2 cut(s)	164, 213
AspS9I	GGNCC	2 cut(s)	43, 161
AsuC2I	CCSGG	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	43, 161
BauI	CACGAG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	49, 262
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	43, 161
BmgT120I	GGNCC	2 cut(s)	43, 161
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	154, 164
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	49, 262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	156, 205
BspACI	CCGC	2 cut(s)	184, 246
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	164, 213
BspQI	GCTCTTC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	156, 205
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	70, 220
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	159, 208
BstMAI	GTCTC	2 cut(s)	49, 262
BstMBI	GATC	2 cut(s)	156, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	43, 161
CpoI	CGGWCCG	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	66
CspI	CGGWCCG	1 cut(s)	161
CviAII	CATG	1 cut(s)	30
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	2 cut(s)	158, 207
DpnII	GATC	2 cut(s)	156, 205
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	43, 161
EcoO109I	RGGNCCY	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	1 cut(s)	33
FaiI	YATR	3 cut(s)	20, 31, 75
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	29
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	317
HapII	CCGG	2 cut(s)	154, 164
Hin1II	CATG	1 cut(s)	33
HincII	GTYRAC	3 cut(s)	13, 200, 293
HindII	GTYRAC	3 cut(s)	13, 200, 293
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	154, 164
Hpy166II	GTNNAC	4 cut(s)	13, 200, 240, 293
Hpy188I	TCNGA	1 cut(s)	117
Hpy8I	GTNNAC	4 cut(s)	13, 200, 240, 293
Hpy99I	CGWCG	3 cut(s)	131, 229, 238
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	70, 220
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	51, 271, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	156, 205
LguI	GCTCTTC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	157, 167, 177, 281, 326
MaeII	ACGT	1 cut(s)	227
MalI	GATC	2 cut(s)	158, 207
MboI	GATC	2 cut(s)	156, 205
MboII	GAAGA	7 cut(s)	89, 92, 95, 98, 130, 169, 294
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	188, 272
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	1 cut(s)	124
MspI	CCGG	2 cut(s)	154, 164
MspR9I	CCNGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	156, 205
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	43, 161
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
Rsr2I	CGGWCCG	1 cut(s)	161
RsrII	CGGWCCG	1 cut(s)	161
SalI	GTCGAC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	156, 205
Sau96I	GGNCC	2 cut(s)	43, 161
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	3 cut(s)	48, 135, 230
SinI	GGWCC	2 cut(s)	43, 161
Sse9I	AATT	2 cut(s)	188, 272
SsiI	CCGC	2 cut(s)	184, 246
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	70, 220
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	99, 213, 292
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	188, 272
TspDTI	ATGAA	2 cut(s)	17, 90
Tth111I	GACNNNGTC	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	43, 161
XmiI	GTMKAC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.