RLG00000035990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011712
Physical Location & Seq
Reverse (-)
74601887 .. 74602591
705 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035990

Sequence Viewer

Length: 438 bp
ATGGGCAATAGCCGCAATACTTTTCATCCTACTTTTCCCCGGGAATCAAATTTGGCGCGACATTTTGGATTAGTGCACGAGACCAAAGAGTACGTGTATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGATGAAGATGAAGACTTCCGAGTCCGTGTCGTTTCTTTTCTTCGACGACAACACCCGGATCTGTCCTTATTTTTTTCTTTCCGAATCTTCAACCGCATCCTTATAAGTCAACGAGATCTAAACGACACCGACGACCCCGTGCCGACGTTGTCGTCGTCCTCGTCCACCGGTTTCGACTCCTTCCCATTGCAATTTGCAAGAAGAGCAAGTCGACCGGAGAAAGAGATAGACCAGACTCATCTCCTGGGTTTGCTTGATTGTGATTCAGTCCAAAAGAAAAAAGAAATCTTGATAAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

17.07

Weight (kDa)

4.77

Isoelectric Point (pI)

73.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AasI GACNNNNNNGTC 2 cut(s) 155, 286
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 13, 229
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 93
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 49
AsiGI ACCGGT 1 cut(s) 302
AspLEI GCGC 1 cut(s) 58
AsuC2I CCSGG 3 cut(s) 40, 41, 191
AvaI CYCGRG 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 78
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 380
BcnI CCSGG 3 cut(s) 40, 41, 191
BcoDI GTCTC 1 cut(s) 74
BglII AGATCT 1 cut(s) 250
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 4 cut(s) 40, 41, 191, 380
BmeT110I CYCGRG 1 cut(s) 39
BmrFI CCNGG 4 cut(s) 40, 41, 191, 380
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 3 cut(s) 40, 41, 191
BsaAI YACGTR 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 38, 39, 379
BsaWI WCCGGW 2 cut(s) 302, 349
Bse118I RCCGGY 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 38, 39, 379
BseGI GGATG 2 cut(s) 25, 231
BseMI GCAATG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 4 cut(s) 40, 191, 303, 350
BsmAI GTCTC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 193, 250
BspACI CCGC 2 cut(s) 13, 229
BspFNI CGCG 1 cut(s) 58
BspPI GGATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 38, 39, 379
BssMI GATC 2 cut(s) 193, 250
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 94
BstF5I GGATG 2 cut(s) 25, 231
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 196, 253
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 193, 250
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 12, 338
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 4 cut(s) 38, 39, 189, 378
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 193, 250
BstYI RGATCY 2 cut(s) 193, 250
BtsCI GGATG 2 cut(s) 25, 231
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 302
Cfr9I CCCGGG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 302
CviJI RGCY 2 cut(s) 12, 434
CviKI_1 RGCY 2 cut(s) 12, 434
CviQI GTAC 1 cut(s) 91
DpnI GATC 2 cut(s) 195, 252
DpnII GATC 2 cut(s) 193, 250
DrdI GACNNNNNNGTC 2 cut(s) 155, 286
DseDI GACNNNNNNGTC 2 cut(s) 155, 286
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 378
FaiI YATR 2 cut(s) 99, 239
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 2 cut(s) 12, 218
Fsp4HI GCNGC 1 cut(s) 13
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 13
HapII CCGG 4 cut(s) 40, 191, 303, 350
HhaI GCGC 1 cut(s) 58
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 2 cut(s) 245, 347
HindII GTYRAC 2 cut(s) 245, 347
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 6 cut(s) 44, 156, 219, 311, 370, 398
HpaII CCGG 4 cut(s) 40, 191, 303, 350
Hpy166II GTNNAC 4 cut(s) 76, 245, 300, 347
Hpy188I TCNGA 2 cut(s) 155, 218
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 4 cut(s) 76, 245, 300, 347
Hpy99I CGWCG 4 cut(s) 183, 269, 283, 292
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 2 cut(s) 93, 281
HpyCH4V TGCA 3 cut(s) 76, 325, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 338
HpySE526I ACGT 2 cut(s) 93, 281
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 193, 250
LguI GCTCTTC 1 cut(s) 331
LpnPI CCDG 7 cut(s) 53, 204, 316, 363, 365, 380, 392
LweI GCATC 1 cut(s) 240
MaeII ACGT 2 cut(s) 93, 281
MalI GATC 2 cut(s) 195, 252
MboI GATC 2 cut(s) 193, 250
MflI RGATCY 2 cut(s) 193, 250
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 49, 326
MlyI GAGTC 3 cut(s) 165, 305, 364
MnlI CCTC 1 cut(s) 304
MseI TTAA 1 cut(s) 436
MspI CCGG 4 cut(s) 40, 191, 303, 350
MspR9I CCNGG 4 cut(s) 40, 41, 191, 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 12, 338
NciI CCSGG 3 cut(s) 40, 41, 191
NdeII GATC 2 cut(s) 193, 250
PciSI GCTCTTC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 287, 293
PfeI GAWTC 3 cut(s) 44, 219, 398
PflFI GACNNNGTC 1 cut(s) 283
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 3 cut(s) 164, 305, 364
PpsI GAGTC 3 cut(s) 164, 305, 364
Ppu21I YACGTR 1 cut(s) 94
PsiI TTATAA 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PsuI RGATCY 2 cut(s) 193, 250
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SalI GTCGAC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 193, 250
SchI GAGTC 3 cut(s) 165, 305, 364
ScrFI CCNGG 4 cut(s) 40, 41, 191, 380
SduI GDGCHC 1 cut(s) 78
SetI ASST 3 cut(s) 96, 284, 436
SfaNI GCATC 1 cut(s) 240
SmaI CCCGGG 1 cut(s) 41
Sse9I AATT 2 cut(s) 49, 326
SsiI CCGC 2 cut(s) 13, 229
StyD4I CCNGG 4 cut(s) 38, 39, 189, 378
TaiI ACGT 2 cut(s) 96, 284
TaqI TCGA 3 cut(s) 178, 309, 346
TasI AATT 2 cut(s) 49, 326
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 3 cut(s) 44, 219, 398
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TspDTI ATGAA 5 cut(s) 14, 114, 147, 153, 159
TspGWI ACGGA 1 cut(s) 149
TspMI CCCGGG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 283
VneI GTGCAC 1 cut(s) 74
XapI RAATTY 1 cut(s) 49
XmaI CCCGGG 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.