pycom111g02550

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0011712
Physical Location & Seq
Forward (+)
1532221 .. 1533087
867 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02550.1

Sequence Viewer

Length: 867 bp
ATGCAAAACGAAGACGATTTCGAACAGGAATTCGTCTCTCCCAGCTTCAACAGCTACTCCACCGACAAACTAGCGGATGTCGCCGCCAAGGTCTGTCGGGAATTCGACCACCTGAATTTGCTCGAAGAATTGGAGTCCGATCAATTAGGGGACCATAAAAACGACAATGAATCCGCCGCCGACGAGGAGGAGGAGGAGGAGGAGTTCGAATTCGTGTCGTTTCAGAAATCAGCCGACCAGGTTTTCTTCGACGAACACCAGATCGGCCCCGTTTTCCCCGTATTTAACCGCGACCTCCTGTCGGATAAAAGTCAACGCGACCTTCTTGCCGGCGGTCGGGATAATAAAAAGGTGGAGGAGGACGATGATGGTCTGCCGTCGTCGTCCTCATCCGACGTGGACGAGCTGGAGGAGGTCCCACCGGGGAATTACTGCGTGTGGATGCCGAAAGCCGCGTCGGGAGAAGCGCGTGGGAAGTGCAAGAAGAGCAAATCCACCGGGACTTCGTCATCAAGGCGGTGGAGCCTCCGGGATTTGCTGCGGCGGAGCAACAGCGAAGGCGGCAAGGAGTTGGTTTTCTTGACGCCTTTGTCGTCCAGCTCCAAAAAAGTAGAATACAACAAGGAAACCAAAAAGAGCTCCGGGTCCGGAACCGGGGCGGCGTCCGCGTCTGATGTGCCCAGGAAAAAGCCCAGTAAAGGTCCAAAAGCAGTGGCGATGGCTCACGAGGCGTTCTATGTGAGGAACAAAACGGTGGCGAAGGACGGGTATAATAAGCGGCGGTCTTATCTTCCGTACAGGCAGGACCTGGTGGGGTTCTTTGCTAGTGTGAACGCCATGGGCAGAAGCTTTCCCCCTGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

289

Amino Acids

32.04

Weight (kDa)

5.08

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 83 - 265 4.4e-26 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 589
AccII CGCG 5 cut(s) 291, 318, 455, 469, 668
AccIII TCCGGA 1 cut(s) 647
AcsI RAATTY 4 cut(s) 29, 101, 115, 209
AcyI GRCGYC 2 cut(s) 584, 662
AfaI GTAC 1 cut(s) 797
AfiI CCNNNNNNNGG 4 cut(s) 301, 336, 654, 698
AgsI TTSAA 1 cut(s) 49
AhdI GACNNNNNGTC 1 cut(s) 298
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 3 cut(s) 237, 680, 807
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 6 cut(s) 45, 54, 406, 600, 639, 849
AluI AGCT 6 cut(s) 45, 54, 406, 600, 639, 849
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 808
Aor13HI TCCGGA 1 cut(s) 647
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 4 cut(s) 29, 101, 115, 209
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 6 cut(s) 151, 266, 415, 645, 701, 805
AsuC2I CCSGG 5 cut(s) 423, 499, 530, 643, 655
AsuII TTCGAA 2 cut(s) 21, 207
AvaII GGWCC 5 cut(s) 151, 415, 645, 701, 805
BaeGI GKGCMC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 641
BauI CACGAG 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 1 cut(s) 525
BccI CCATC 2 cut(s) 362, 712
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 3 cut(s) 239, 682, 809
BcnI CCSGG 5 cut(s) 423, 499, 530, 643, 655
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 71, 825
BisI GCNGC 8 cut(s) 84, 177, 453, 539, 542, 562, 660, 779
BlsI GCNGC 8 cut(s) 85, 178, 454, 540, 543, 563, 661, 780
Bme1390I CCNGG 8 cut(s) 239, 423, 499, 530, 643, 655, 682, 809
Bme18I GGWCC 5 cut(s) 151, 415, 645, 701, 805
BmeRI GACNNNNNGTC 1 cut(s) 298
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 6 cut(s) 151, 266, 415, 645, 701, 805
BmiI GGNNCC 6 cut(s) 152, 268, 417, 524, 646, 652
BmrFI CCNGG 8 cut(s) 239, 423, 499, 530, 643, 655, 682, 809
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 428
Bpu14I TTCGAA 2 cut(s) 21, 207
BpuMI CCSGG 5 cut(s) 423, 499, 530, 643, 655
BsaHI GRCGYC 2 cut(s) 584, 662
BsaJI CCNNGG 5 cut(s) 87, 422, 654, 680, 837
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 301, 336, 654, 698
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 647
BseBI CCWGG 3 cut(s) 239, 682, 809
BseDI CCNNGG 5 cut(s) 87, 422, 654, 680, 837
BseGI GGATG 3 cut(s) 82, 389, 447
BseLI CCNNNNNNNGG 4 cut(s) 301, 336, 654, 698
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 8 cut(s) 200, 203, 206, 209, 212, 215, 371, 425
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 1 cut(s) 525
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 5 cut(s) 291, 318, 455, 469, 668
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 7 cut(s) 330, 422, 498, 529, 642, 648, 654
BslFI GGGAC 3 cut(s) 164, 401, 514
BslI CCNNNNNNNGG 4 cut(s) 301, 336, 654, 698
BsmAI GTCTC 1 cut(s) 40
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 164, 401, 514
BsnI GGCC 1 cut(s) 267
Bsp119I TTCGAA 2 cut(s) 21, 207
Bsp1286I GDGCHC 2 cut(s) 641, 681
Bsp13I TCCGGA 1 cut(s) 647
Bsp143I GATC 2 cut(s) 139, 261
Bsp19I CCATGG 1 cut(s) 837
BspANI GGCC 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 647
BspFNI CGCG 5 cut(s) 291, 318, 455, 469, 668
BspLI GGNNCC 6 cut(s) 152, 268, 417, 524, 646, 652
BspQI GCTCTTC 1 cut(s) 479
BspT104I TTCGAA 2 cut(s) 21, 207
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 5 cut(s) 87, 422, 654, 680, 837
BssMI GATC 2 cut(s) 139, 261
BssNI GRCGYC 2 cut(s) 584, 662
BssSI CACGAG 1 cut(s) 725
BssT1I CCWWGG 2 cut(s) 87, 837
Bst2BI CACGAG 1 cut(s) 725
Bst2UI CCWGG 3 cut(s) 239, 682, 809
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 2 cut(s) 584, 662
BstBI TTCGAA 2 cut(s) 21, 207
BstC8I GCNNGC 1 cut(s) 331
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 3 cut(s) 82, 389, 447
BstFNI CGCG 5 cut(s) 291, 318, 455, 469, 668
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 2 cut(s) 142, 264
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 139, 261
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 6 cut(s) 51, 80, 486, 561, 665, 728
BstNI CCWGG 3 cut(s) 239, 682, 809
BstSCI CCNGG 8 cut(s) 237, 421, 497, 528, 641, 653, 680, 807
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 5 cut(s) 291, 318, 455, 469, 668
BstV1I GCAGC 1 cut(s) 525
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 837
BtgZI GCGATG 1 cut(s) 731
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 3 cut(s) 82, 389, 447
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 808
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 6 cut(s) 151, 266, 415, 645, 701, 805
CseI GACGC 4 cut(s) 444, 592, 651, 657
CsiI ACCWGGT 2 cut(s) 237, 807
Csp6I GTAC 1 cut(s) 796
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 1 cut(s) 838
CviQI GTAC 1 cut(s) 796
DpnI GATC 2 cut(s) 141, 263
DpnII GATC 2 cut(s) 139, 261
DrdI GACNNNNNNGTC 1 cut(s) 589
DriI GACNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 479
Eam1105I GACNNNNNGTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 2 cut(s) 163, 559
Ecl136II GAGCTC 1 cut(s) 639
Eco130I CCWWGG 2 cut(s) 87, 837
Eco24I GRGCYC 1 cut(s) 641
Eco47I GGWCC 5 cut(s) 151, 415, 645, 701, 805
Eco53kI GAGCTC 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 639
EcoO109I RGGNCCY 2 cut(s) 415, 805
EcoRI GAATTC 3 cut(s) 29, 101, 209
EcoRII CCWGG 3 cut(s) 237, 680, 807
EcoT14I CCWWGG 2 cut(s) 87, 837
EcoT38I GRGCYC 1 cut(s) 641
ErhI CCWWGG 2 cut(s) 87, 837
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 841
FaiI YATR 4 cut(s) 156, 738, 771, 839
FaqI GGGAC 3 cut(s) 164, 401, 514
FatI CATG 1 cut(s) 837
Fnu4HI GCNGC 8 cut(s) 84, 177, 453, 539, 542, 562, 660, 779
FokI GGATG 3 cut(s) 89, 376, 454
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 8 cut(s) 84, 177, 453, 539, 542, 562, 660, 779
FspBI CTAG 2 cut(s) 71, 825
GlaI GCGC 1 cut(s) 468
GluI GCNGC 8 cut(s) 84, 177, 453, 539, 542, 562, 660, 779
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 1 cut(s) 267
HapII CCGG 7 cut(s) 330, 422, 498, 529, 642, 648, 654
HgaI GACGC 4 cut(s) 444, 592, 651, 657
HhaI GCGC 1 cut(s) 469
Hin1I GRCGYC 2 cut(s) 584, 662
Hin1II CATG 1 cut(s) 841
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 847
HinfI GANTC 2 cut(s) 134, 170
HpaII CCGG 7 cut(s) 330, 422, 498, 529, 642, 648, 654
Hpy166II GTNNAC 3 cut(s) 314, 400, 832
Hpy188I TCNGA 6 cut(s) 139, 225, 304, 394, 673, 866
Hpy188III TCNNGA 6 cut(s) 98, 338, 459, 580, 648, 725
Hpy8I GTNNAC 3 cut(s) 314, 400, 832
Hpy99I CGWCG 6 cut(s) 185, 254, 382, 385, 398, 460
HpyAV CCTTC 3 cut(s) 332, 551, 754
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 2 cut(s) 4, 480
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 80, 486, 561, 665, 728
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 2 cut(s) 584, 662
Hsp92II CATG 1 cut(s) 841
HspAI GCGC 1 cut(s) 467
Kpn2I TCCGGA 1 cut(s) 647
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 139, 261
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 4 cut(s) 522, 546, 605, 644
Lsp1109I GCAGC 1 cut(s) 525
LweI GCATC 1 cut(s) 432
MabI ACCWGGT 2 cut(s) 237, 807
MaeI CTAG 2 cut(s) 71, 825
MaeII ACGT 1 cut(s) 396
MalI GATC 2 cut(s) 141, 263
MboI GATC 2 cut(s) 139, 261
MboII GAAGA 5 cut(s) 23, 137, 238, 496, 782
MhlI GDGCHC 2 cut(s) 641, 681
MluCI AATT 7 cut(s) 29, 101, 115, 128, 143, 209, 427
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 282, 417
MroI TCCGGA 1 cut(s) 647
MroNI GCCGGC 1 cut(s) 329
MseI TTAA 1 cut(s) 285
MspI CCGG 7 cut(s) 330, 422, 498, 529, 642, 648, 654
MspR9I CCNGG 8 cut(s) 239, 423, 499, 530, 643, 655, 682, 809
MvaI CCWGG 3 cut(s) 239, 682, 809
MvnI CGCG 5 cut(s) 291, 318, 455, 469, 668
MwoI GCNNNNNNNGC 6 cut(s) 51, 80, 486, 561, 665, 728
NaeI GCCGGC 1 cut(s) 331
NciI CCSGG 5 cut(s) 423, 499, 530, 643, 655
NcoI CCATGG 1 cut(s) 837
NdeII GATC 2 cut(s) 139, 261
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 841
NlaIV GGNNCC 6 cut(s) 152, 268, 417, 524, 646, 652
NspV TTCGAA 2 cut(s) 21, 207
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 1 cut(s) 590
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 528
PkrI GCNGC 8 cut(s) 85, 178, 454, 540, 543, 563, 661, 780
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 2 cut(s) 415, 805
Psp124BI GAGCTC 1 cut(s) 641
Psp5II RGGWCCY 2 cut(s) 415, 805
Psp6I CCWGG 3 cut(s) 237, 680, 807
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 3 cut(s) 237, 680, 807
PspN4I GGNNCC 6 cut(s) 152, 268, 417, 524, 646, 652
PspPI GGNCC 6 cut(s) 151, 266, 415, 645, 701, 805
PspPPI RGGWCCY 2 cut(s) 415, 805
PstNI CAGNNNCTG 1 cut(s) 808
PsyI GACNNNGTC 1 cut(s) 505
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
SacI GAGCTC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 8 cut(s) 84, 177, 453, 539, 542, 562, 660, 779
Sau3AI GATC 2 cut(s) 139, 261
Sau96I GGNCC 6 cut(s) 151, 266, 415, 645, 701, 805
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 8 cut(s) 239, 423, 499, 530, 643, 655, 682, 809
SduI GDGCHC 2 cut(s) 641, 681
SexAI ACCWGGT 2 cut(s) 237, 807
SfaNI GCATC 1 cut(s) 432
SfuI TTCGAA 2 cut(s) 21, 207
SinI GGWCC 5 cut(s) 151, 415, 645, 701, 805
Sse9I AATT 7 cut(s) 29, 101, 115, 128, 143, 209, 427
SspMI CTAG 2 cut(s) 71, 825
SstI GAGCTC 1 cut(s) 641
StyD4I CCNGG 8 cut(s) 237, 421, 497, 528, 641, 653, 680, 807
StyI CCWWGG 2 cut(s) 87, 837
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 1 cut(s) 399
TaqI TCGA 5 cut(s) 21, 105, 123, 207, 249
TasI AATT 7 cut(s) 29, 101, 115, 128, 143, 209, 427
TauI GCSGC 7 cut(s) 86, 179, 455, 544, 564, 662, 781
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 717
TseI GCWGC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 1 cut(s) 717
Tth111I GACNNNGTC 1 cut(s) 505
VpaK11BI GGWCC 5 cut(s) 151, 415, 645, 701, 805
XapI RAATTY 4 cut(s) 29, 101, 115, 209
XspI CTAG 2 cut(s) 71, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.