Prupe.3G285800_v2.0.a1

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011712
Physical Location & Seq
Reverse (-)
25853647 .. 25855139
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G285800.1

Sequence Viewer

Length: 873 bp
ATGCAAGACGAAGATTTCGAACAGGGACTGGTCTGTCCCAGCTTCAACAGCTACTCCTCCGACAAACTTGCAGACGTCGCAGCCAAAGTCTGCCGAGAGTTCGACAACCTCAATTTGCTCCACAAATCCAATTACTCCGCTGAACAGAAAGAACACGATGATCATAGAAACGACGACGTCGACGACGACTTCGAGTTCGTCTCGTTTCAAAGTTCCGGAAGCCAGGTATTCTTTGACGACAACCAGATCGGTCCCGTTTTCCCCGTATTCAACCGCGACCTTCTGCTTGACAGAAGTCAACGAGATCTCGCGGCCGCCCCTAATAATAAGGAGGTTGTCGAGGAGGAGGAGGATGAAGACGATGCTGCTGCTCTGCCGTCATCGTCGTCCTCCGATGTGGACGAACTGGACTCGGTCCCACAGGGGACGTACTGCGTTTGGATGCCGAAATCAGTGGTGGCACAAGACGCTCGCGGGAAGTGCAAGATTAAGAGCAAGTCAACCGGAACCTCGTCGTCCAGGCGGTGGAGCATAAAGGATTTGCTGCGGCGGAGCAACAGCGAAAGCGGTAGCAAGGACTCGTTTGTGTTCTTGACCCCTTTGTCATCGAGCTCCAAAAAGGCAGCAGAAGAAGAACCCAAGGAAATTAAGAAGAGCTCCGGGTCCGGGTCCGGGCCTGGATCGGGAGGCGGGCCAAACAAGCCCAAAGGGTCGAAGGCGGTGTCGATGGCGCACGAGGCGTTCTACGTGAGGAACAAGACGGTGGCCAAGGACGGGTATAACAAGAGACGGTCTTATCTTCCGTACAGGCAAGACCTCGTTGGGTTCTTTGCTAGCGTCAACGCCATGAGTAGGACCTTCCCTGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

291

Amino Acids

31.96

Weight (kDa)

5.13

Isoelectric Point (pI)

64.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 33, 601
AatII GACGTC 2 cut(s) 78, 180
AccB7I CCANNNNNTGG 1 cut(s) 525
AccI GTMKAC 1 cut(s) 180
AccII CGCG 3 cut(s) 276, 311, 474
AccIII TCCGGA 1 cut(s) 215
AclWI GGATC 1 cut(s) 688
AcoI YGGCCR 2 cut(s) 312, 765
AcyI GRCGYC 2 cut(s) 75, 177
AfaI GTAC 2 cut(s) 431, 806
AfiI CCNNNNNNNGG 6 cut(s) 525, 666, 672, 683, 774, 852
AgsI TTSAA 3 cut(s) 46, 209, 271
AjnI CCWGG 3 cut(s) 222, 518, 676
AluBI AGCT 4 cut(s) 42, 51, 612, 657
AluI AGCT 4 cut(s) 42, 51, 612, 657
Alw21I GWGCWC 2 cut(s) 614, 659
Alw26I GTCTC 2 cut(s) 205, 781
AlwI GGATC 1 cut(s) 688
AlwNI CAGNNNCTG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 4 cut(s) 312, 674, 692, 765
ApeKI GCWGC 5 cut(s) 80, 365, 368, 544, 623
ArsI GACNNNNNNTTYG 7 cut(s) 31, 173, 179, 205, 211, 707, 739
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 7 cut(s) 251, 415, 663, 669, 674, 692, 855
AsuC2I CCSGG 3 cut(s) 661, 667, 673
AsuII TTCGAA 1 cut(s) 18
AsuNHI GCTAGC 1 cut(s) 833
AvaII GGWCC 5 cut(s) 251, 415, 663, 669, 855
BalI TGGCCA 1 cut(s) 767
BanII GRGCYC 2 cut(s) 614, 659
BauI CACGAG 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 614, 659
BbvI GCAGC 5 cut(s) 92, 352, 355, 531, 635
BccI CCATC 1 cut(s) 721
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 4 cut(s) 50, 84, 350, 384
BciT130I CCWGG 3 cut(s) 224, 520, 678
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 3 cut(s) 661, 667, 673
BcoDI GTCTC 2 cut(s) 205, 781
BfaI CTAG 1 cut(s) 834
BglII AGATCT 1 cut(s) 304
BisI GCNGC 8 cut(s) 81, 312, 315, 366, 369, 545, 548, 624
BlsI GCNGC 8 cut(s) 82, 313, 316, 367, 370, 546, 549, 625
Bme1390I CCNGG 6 cut(s) 224, 520, 661, 667, 673, 678
Bme18I GGWCC 5 cut(s) 251, 415, 663, 669, 855
BmgT120I GGNCC 7 cut(s) 251, 415, 663, 669, 674, 692, 855
BmiI GGNNCC 5 cut(s) 253, 417, 508, 664, 670
BmrFI CCNGG 6 cut(s) 224, 520, 661, 667, 673, 678
BmsI GCATC 2 cut(s) 352, 432
BmtI GCTAGC 1 cut(s) 837
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu14I TTCGAA 1 cut(s) 18
BpuMI CCSGG 3 cut(s) 661, 667, 673
BsaAI YACGTR 1 cut(s) 748
BsaHI GRCGYC 2 cut(s) 75, 177
BsaJI CCNNGG 2 cut(s) 639, 768
BsaWI WCCGGW 2 cut(s) 215, 503
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 6 cut(s) 525, 666, 672, 683, 774, 852
Bse1I ACTGG 2 cut(s) 33, 411
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 3 cut(s) 224, 520, 678
BseDI CCNNGG 2 cut(s) 639, 768
BseGI GGATG 2 cut(s) 358, 447
BseLI CCNNNNNNNGG 6 cut(s) 525, 666, 672, 683, 774, 852
BseNI ACTGG 2 cut(s) 33, 411
BseRI GAGGAG 4 cut(s) 46, 356, 359, 362
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 5 cut(s) 92, 352, 355, 531, 635
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 3 cut(s) 276, 311, 474
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 4 cut(s) 314, 676, 694, 767
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 614, 659
BsiSI CCGG 5 cut(s) 216, 504, 660, 666, 672
BslFI GGGAC 5 cut(s) 21, 39, 237, 401, 439
BslI CCNNNNNNNGG 6 cut(s) 525, 666, 672, 683, 774, 852
BsmAI GTCTC 2 cut(s) 205, 781
BsmBI CGTCTC 2 cut(s) 205, 781
BsmFI GGGAC 5 cut(s) 21, 39, 237, 401, 439
BsnI GGCC 4 cut(s) 314, 676, 694, 767
Bsp119I TTCGAA 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 614, 659
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 4 cut(s) 160, 246, 304, 680
BspANI GGCC 4 cut(s) 314, 676, 694, 767
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 3 cut(s) 276, 311, 474
BspLI GGNNCC 5 cut(s) 253, 417, 508, 664, 670
BspOI GCTAGC 1 cut(s) 837
BspPI GGATC 1 cut(s) 688
BspQI GCTCTTC 1 cut(s) 647
BspT104I TTCGAA 1 cut(s) 18
BsrI ACTGG 2 cut(s) 33, 411
BssECI CCNNGG 2 cut(s) 639, 768
BssMI GATC 4 cut(s) 160, 246, 304, 680
BssNI GRCGYC 2 cut(s) 75, 177
BssSI CACGAG 1 cut(s) 734
BssT1I CCWWGG 2 cut(s) 639, 768
Bst2BI CACGAG 1 cut(s) 734
Bst2UI CCWGG 3 cut(s) 224, 520, 678
Bst4CI ACNGT 2 cut(s) 763, 792
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 2 cut(s) 75, 177
BstBAI YACGTR 1 cut(s) 748
BstBI TTCGAA 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 472, 692, 835
BstF5I GGATG 2 cut(s) 358, 447
BstFNI CGCG 3 cut(s) 276, 311, 474
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 163, 249, 307, 683
BstMAI GTCTC 2 cut(s) 205, 781
BstMBI GATC 4 cut(s) 160, 246, 304, 680
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 6 cut(s) 48, 77, 467, 480, 700, 737
BstNI CCWGG 3 cut(s) 224, 520, 678
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 6 cut(s) 222, 518, 659, 665, 671, 676
BstUI CGCG 3 cut(s) 276, 311, 474
BstV1I GCAGC 5 cut(s) 92, 352, 355, 531, 635
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 4 cut(s) 314, 676, 694, 767
BtsCI GGATG 2 cut(s) 358, 447
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 3 cut(s) 472, 692, 835
CaiI CAGNNNCTG 1 cut(s) 28
CciNI GCGGCCGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 7 cut(s) 251, 415, 663, 669, 674, 692, 855
CseI GACGC 2 cut(s) 476, 826
Csp6I GTAC 2 cut(s) 430, 805
CviAII CATG 1 cut(s) 847
CviQI GTAC 2 cut(s) 430, 805
DpnI GATC 4 cut(s) 162, 248, 306, 682
DpnII GATC 4 cut(s) 160, 246, 304, 680
DrdI GACNNNNNNGTC 2 cut(s) 33, 601
DseDI GACNNNNNNGTC 2 cut(s) 33, 601
EaeI YGGCCR 2 cut(s) 312, 765
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
EciI GGCGGA 1 cut(s) 565
Ecl136II GAGCTC 2 cut(s) 612, 657
EclXI CGGCCG 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 639, 768
Eco24I GRGCYC 2 cut(s) 614, 659
Eco47I GGWCC 5 cut(s) 251, 415, 663, 669, 855
Eco52I CGGCCG 1 cut(s) 312
Eco53kI GAGCTC 2 cut(s) 612, 657
EcoICRI GAGCTC 2 cut(s) 612, 657
EcoO109I RGGNCCY 1 cut(s) 855
EcoRII CCWGG 3 cut(s) 222, 518, 676
EcoT14I CCWWGG 2 cut(s) 639, 768
EcoT38I GRGCYC 2 cut(s) 614, 659
ErhI CCWWGG 2 cut(s) 639, 768
Esp3I CGTCTC 2 cut(s) 205, 781
FaeI CATG 1 cut(s) 850
FaiI YATR 4 cut(s) 165, 533, 780, 848
FaqI GGGAC 5 cut(s) 21, 39, 237, 401, 439
FatI CATG 1 cut(s) 846
FauI CCCGC 2 cut(s) 467, 683
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 8 cut(s) 81, 312, 315, 366, 369, 545, 548, 624
FokI GGATG 2 cut(s) 365, 454
FriOI GRGCYC 2 cut(s) 614, 659
Fsp4HI GCNGC 8 cut(s) 81, 312, 315, 366, 369, 545, 548, 624
FspBI CTAG 1 cut(s) 834
GlaI GCGC 1 cut(s) 732
GluI GCNGC 8 cut(s) 81, 312, 315, 366, 369, 545, 548, 624
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 4 cut(s) 314, 676, 694, 767
HapII CCGG 5 cut(s) 216, 504, 660, 666, 672
HgaI GACGC 2 cut(s) 476, 826
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 2 cut(s) 75, 177
Hin1II CATG 1 cut(s) 850
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 4 cut(s) 181, 299, 501, 841
HindII GTYRAC 4 cut(s) 181, 299, 501, 841
HinfI GANTC 2 cut(s) 410, 578
HpaII CCGG 5 cut(s) 216, 504, 660, 666, 672
Hpy166II GTNNAC 5 cut(s) 181, 299, 400, 501, 841
Hpy188I TCNGA 3 cut(s) 61, 394, 872
Hpy188III TCNNGA 3 cut(s) 216, 592, 684
Hpy8I GTNNAC 5 cut(s) 181, 299, 400, 501, 841
Hpy99I CGWCG 8 cut(s) 80, 176, 179, 182, 185, 188, 388, 517
HpyAV CCTTC 3 cut(s) 290, 709, 868
HpyCH4III ACNGT 2 cut(s) 763, 792
HpyCH4IV ACGT 4 cut(s) 75, 177, 428, 747
HpyCH4V TGCA 3 cut(s) 4, 71, 483
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 77, 467, 480, 700, 737
HpySE526I ACGT 4 cut(s) 75, 177, 428, 747
Hsp92I GRCGYC 2 cut(s) 75, 177
Hsp92II CATG 1 cut(s) 850
HspAI GCGC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 160, 246, 304, 680
LguI GCTCTTC 1 cut(s) 647
LmnI GCTCC 5 cut(s) 123, 528, 552, 617, 662
Lsp1109I GCAGC 5 cut(s) 92, 352, 355, 531, 635
LweI GCATC 2 cut(s) 352, 432
MaeI CTAG 1 cut(s) 834
MaeII ACGT 4 cut(s) 75, 177, 428, 747
MalI GATC 4 cut(s) 162, 248, 306, 682
MboI GATC 4 cut(s) 160, 246, 304, 680
MboII GAAGA 6 cut(s) 23, 368, 641, 644, 664, 791
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 614, 659
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 3 cut(s) 112, 130, 645
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 2 cut(s) 404, 572
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 767
MroI TCCGGA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 767
MseI TTAA 2 cut(s) 489, 648
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 5 cut(s) 216, 504, 660, 666, 672
MspR9I CCNGG 6 cut(s) 224, 520, 661, 667, 673, 678
MvaI CCWGG 3 cut(s) 224, 520, 678
MvnI CGCG 3 cut(s) 276, 311, 474
MwoI GCNNNNNNNGC 6 cut(s) 48, 77, 467, 480, 700, 737
NciI CCSGG 3 cut(s) 661, 667, 673
NdeII GATC 4 cut(s) 160, 246, 304, 680
NheI GCTAGC 1 cut(s) 833
NlaIII CATG 1 cut(s) 850
NlaIV GGNNCC 5 cut(s) 253, 417, 508, 664, 670
NmeAIII GCCGAG 1 cut(s) 119
NotI GCGGCCGC 1 cut(s) 312
NspV TTCGAA 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 647
PcsI WCGNNNNNNNCGW 5 cut(s) 15, 177, 180, 183, 189
PflFI GACNNNGTC 2 cut(s) 176, 413
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 8 cut(s) 82, 313, 316, 367, 370, 546, 549, 625
PleI GAGTC 2 cut(s) 404, 572
PpsI GAGTC 2 cut(s) 404, 572
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 855
PshAI GACNNNNGTC 1 cut(s) 294
Psp124BI GAGCTC 2 cut(s) 614, 659
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 222, 518, 676
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 3 cut(s) 222, 518, 676
PspN4I GGNNCC 5 cut(s) 253, 417, 508, 664, 670
PspPI GGNCC 7 cut(s) 251, 415, 663, 669, 674, 692, 855
PspPPI RGGWCCY 1 cut(s) 855
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 304
PsyI GACNNNGTC 2 cut(s) 176, 413
RsaI GTAC 2 cut(s) 431, 806
RsaNI GTAC 2 cut(s) 430, 805
SacI GAGCTC 2 cut(s) 614, 659
SalI GTCGAC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 2 cut(s) 489, 648
SatI GCNGC 8 cut(s) 81, 312, 315, 366, 369, 545, 548, 624
Sau3AI GATC 4 cut(s) 160, 246, 304, 680
Sau96I GGNCC 7 cut(s) 251, 415, 663, 669, 674, 692, 855
SchI GAGTC 2 cut(s) 404, 572
ScrFI CCNGG 6 cut(s) 224, 520, 661, 667, 673, 678
SduI GDGCHC 2 cut(s) 614, 659
SfaNI GCATC 2 cut(s) 352, 432
SfuI TTCGAA 1 cut(s) 18
SgrDI CGTCGACG 1 cut(s) 179
SinI GGWCC 5 cut(s) 251, 415, 663, 669, 855
Sse9I AATT 3 cut(s) 112, 130, 645
SspMI CTAG 1 cut(s) 834
SstI GAGCTC 2 cut(s) 614, 659
StyD4I CCNGG 6 cut(s) 222, 518, 659, 665, 671, 676
StyI CCWWGG 2 cut(s) 639, 768
TaaI ACNGT 2 cut(s) 763, 792
TaiI ACGT 4 cut(s) 78, 180, 431, 750
TaqI TCGA 8 cut(s) 18, 102, 180, 192, 339, 608, 713, 725
TaqII GACCGA 2 cut(s) 239, 403
TasI AATT 3 cut(s) 112, 130, 645
TauI GCSGC 3 cut(s) 314, 317, 550
Tru1I TTAA 2 cut(s) 489, 648
Tru9I TTAA 2 cut(s) 489, 648
TscAI CASTG 1 cut(s) 459
TseI GCWGC 5 cut(s) 80, 365, 368, 544, 623
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 792
TspRI CASTG 1 cut(s) 459
Tth111I GACNNNGTC 2 cut(s) 176, 413
Van91I CCANNNNNTGG 1 cut(s) 525
VpaK11BI GGWCC 5 cut(s) 251, 415, 663, 669, 855
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 834
ZraI GACGTC 2 cut(s) 76, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.