Rmu_ssc0000252.1_g000049

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000252.1
OG0011712
Physical Location & Seq
Reverse (-)
285685 .. 286500
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000252.1_g000049.1.cds

Sequence Viewer

Length: 816 bp
atgcaaaaccaggattactccgaccagggtttggtctgtcccagcttcaacagctacgcctcggctaccacagccgacaccgccgccaaggtttgccgggaattcagcagcctcggattagtggatgagaacaaagagttcgagtatgaaggaggagagaaacaagacgatgacttcgagttcgtgtcgtttcagaaatctgccgacgaggttttcttcggcgacaacactcggattggtccggttttccccgtcttcaaccgcgaccttataagtcaacgggatctaaactacaccgacgacgtcgacgccgtgccgtcgtcgtcctcagcgtcatcagacgtggacgagctggagaacgttccggccggtagctactgcgtttggatgcctaaaacgacgccggcctcgtctccttcccattgcaagaagagcaagtcgaccggaacgtcgtcgtctcggcggtggaggctgagggacttgctgcggcggagcaacagcgaaggcgggaaggactccttcgtgctgctgacgccttccctgacgtcatcgtcgagctcaaagaagcaggtggctgctaacgatcatcatcatcatcctaatgagaaaatggtggtgacgaaggggaagaagagctttaatgggtcgaggccgaaaggcccgaacgctgtgtcgatggcgcacgaggtgttctacgcgaagagtaaagagaaagatgggtataataagagacagtcgtatcttccttacaggaaagacctggtggggttctttgctagtgtgaacgccatgggaaggactttccctactttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

271

Amino Acids

30.06

Weight (kDa)

7.01

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AarI CACCTGC 1 cut(s) 559
AasI GACNNNNNNGTC 2 cut(s) 448, 550
AatII GACGTC 2 cut(s) 306, 548
Acc36I ACCTGC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 31
AccI GTMKAC 2 cut(s) 306, 440
AccII CGCG 2 cut(s) 264, 698
AciI CCGC 7 cut(s) 81, 84, 262, 463, 487, 490, 507
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 101
AcyI GRCGYC 5 cut(s) 303, 309, 401, 533, 545
AdeI CACNNNGTG 1 cut(s) 688
AfiI CCNNNNNNNGG 2 cut(s) 31, 795
AgsI TTSAA 2 cut(s) 49, 259
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 3 cut(s) 9, 24, 759
AluBI AGCT 6 cut(s) 45, 54, 352, 375, 558, 636
AluI AGCT 6 cut(s) 45, 54, 352, 375, 558, 636
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 3 cut(s) 417, 462, 724
AlwI GGATC 1 cut(s) 291
AoxI GGCC 4 cut(s) 366, 405, 650, 658
ApeKI GCWGC 4 cut(s) 108, 484, 526, 575
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 6 cut(s) 158, 164, 190, 196, 656, 688
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 2 cut(s) 239, 659
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 722, 755
BanII GRGCYC 1 cut(s) 560
BauI CACGAG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 560
BbvCI CCTCAGC 2 cut(s) 328, 473
BbvI GCAGC 4 cut(s) 120, 471, 513, 562
BccI CCATC 2 cut(s) 670, 710
BceAI ACGGC 2 cut(s) 296, 301
BciT130I CCWGG 3 cut(s) 11, 26, 761
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 417, 462, 724
BfaI CTAG 1 cut(s) 777
BfuAI ACCTGC 1 cut(s) 559
BisI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
BlsI GCNGC 6 cut(s) 85, 110, 486, 489, 528, 577
Bme1390I CCNGG 4 cut(s) 11, 26, 98, 761
Bme18I GGWCC 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 239, 659
BmrFI CCNGG 4 cut(s) 11, 26, 98, 761
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 2 cut(s) 328, 473
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 5 cut(s) 303, 309, 401, 533, 545
BsaJI CCNNGG 5 cut(s) 25, 60, 87, 112, 789
BsaWI WCCGGW 2 cut(s) 241, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 795
Bse118I RCCGGY 2 cut(s) 368, 403
Bse3DI GCAATG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 3 cut(s) 11, 26, 761
BseDI CCNNGG 5 cut(s) 25, 60, 87, 112, 789
BseGI GGATG 3 cut(s) 130, 393, 595
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 31, 795
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 342, 464
BseRI GAGGAG 1 cut(s) 168
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 4 cut(s) 120, 471, 513, 562
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 2 cut(s) 264, 698
Bsh1285I CGRYCG 2 cut(s) 369, 444
BshFI GGCC 4 cut(s) 368, 407, 652, 660
BsiEI CGRYCG 2 cut(s) 369, 444
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 6 cut(s) 97, 242, 365, 369, 404, 444
BslFI GGGAC 2 cut(s) 24, 491
BslI CCNNNNNNNGG 2 cut(s) 31, 795
BsmAI GTCTC 3 cut(s) 417, 462, 724
BsmBI CGTCTC 2 cut(s) 417, 462
BsmFI GGGAC 2 cut(s) 24, 491
BsnI GGCC 4 cut(s) 368, 407, 652, 660
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 2 cut(s) 283, 583
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 7 cut(s) 81, 84, 262, 463, 487, 490, 507
BspANI GGCC 4 cut(s) 368, 407, 652, 660
BspCNI CTCAG 2 cut(s) 341, 465
BspFNI CGCG 2 cut(s) 264, 698
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 1 cut(s) 291
BspQI GCTCTTC 2 cut(s) 425, 626
BsrDI GCAATG 1 cut(s) 421
BsrFI RCCGGY 2 cut(s) 368, 403
BssAI RCCGGY 2 cut(s) 368, 403
BssECI CCNNGG 5 cut(s) 25, 60, 87, 112, 789
BssMI GATC 2 cut(s) 283, 583
BssNI GRCGYC 5 cut(s) 303, 309, 401, 533, 545
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 2 cut(s) 87, 789
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 3 cut(s) 11, 26, 761
Bst4CI ACNGT 1 cut(s) 735
Bst6I CTCTTC 3 cut(s) 425, 626, 695
BstACI GRCGYC 5 cut(s) 303, 309, 401, 533, 545
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 328, 473
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 130, 393, 595
BstFNI CGCG 2 cut(s) 264, 698
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 2 cut(s) 286, 586
BstMAI GTCTC 3 cut(s) 417, 462, 724
BstMBI GATC 2 cut(s) 283, 583
BstMCI CGRYCG 2 cut(s) 369, 444
BstMWI GCNNNNNNNGC 6 cut(s) 51, 71, 80, 432, 469, 532
BstNI CCWGG 3 cut(s) 11, 26, 761
BstSCI CCNGG 4 cut(s) 9, 24, 96, 759
BstUI CGCG 2 cut(s) 264, 698
BstV1I GCAGC 4 cut(s) 120, 471, 513, 562
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BstZI CGGCCG 1 cut(s) 366
BsuRI GGCC 4 cut(s) 368, 407, 652, 660
BtgI CCRYGG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 3 cut(s) 130, 393, 595
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 682
Cfr10I RCCGGY 2 cut(s) 368, 403
Cfr13I GGNCC 2 cut(s) 239, 659
CseI GACGC 4 cut(s) 317, 321, 409, 541
CsiI ACCWGGT 1 cut(s) 759
CviAII CATG 1 cut(s) 790
DdeI CTNAG 2 cut(s) 328, 473
DpnI GATC 2 cut(s) 285, 585
DpnII GATC 2 cut(s) 283, 583
DraIII CACNNNGTG 1 cut(s) 688
DrdI GACNNNNNNGTC 2 cut(s) 448, 550
DseDI GACNNNNNNGTC 2 cut(s) 448, 550
EaeI YGGCCR 1 cut(s) 366
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 3 cut(s) 425, 626, 695
EarI CTCTTC 3 cut(s) 425, 626, 695
EciI GGCGGA 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 558
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 2 cut(s) 87, 789
Eco24I GRGCYC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 239
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 9, 24, 759
EcoT14I CCWWGG 2 cut(s) 87, 789
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 2 cut(s) 87, 789
Esp3I CGTCTC 2 cut(s) 417, 462
FaeI CATG 1 cut(s) 793
FaiI YATR 4 cut(s) 147, 272, 723, 791
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 620, 652
FaqI GGGAC 2 cut(s) 24, 491
FatI CATG 1 cut(s) 789
FauI CCCGC 1 cut(s) 500
FblI GTMKAC 2 cut(s) 306, 440
Fnu4HI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
FokI GGATG 3 cut(s) 137, 400, 582
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
FspBI CTAG 1 cut(s) 777
GlaI GCGC 1 cut(s) 681
GluI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 4 cut(s) 368, 407, 652, 660
HapII CCGG 6 cut(s) 97, 242, 365, 369, 404, 444
HgaI GACGC 4 cut(s) 317, 321, 409, 541
HhaI GCGC 1 cut(s) 682
Hin1I GRCGYC 5 cut(s) 303, 309, 401, 533, 545
Hin1II CATG 1 cut(s) 793
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HincII GTYRAC 3 cut(s) 278, 307, 441
HindII GTYRAC 3 cut(s) 278, 307, 441
HinfI GANTC 1 cut(s) 515
HpaII CCGG 6 cut(s) 97, 242, 365, 369, 404, 444
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 5 cut(s) 278, 307, 346, 441, 784
Hpy188I TCNGA 5 cut(s) 22, 116, 195, 234, 340
Hpy8I GTNNAC 5 cut(s) 278, 307, 346, 441, 784
HpyAV CCTTC 8 cut(s) 143, 426, 497, 505, 529, 546, 616, 789
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 5 cut(s) 303, 342, 360, 449, 545
HpyCH4V TGCA 2 cut(s) 4, 426
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 71, 80, 432, 469, 532
HpyF3I CTNAG 2 cut(s) 328, 473
HpySE526I ACGT 5 cut(s) 303, 342, 360, 449, 545
Hsp92I GRCGYC 5 cut(s) 303, 309, 401, 533, 545
Hsp92II CATG 1 cut(s) 793
HspAI GCGC 1 cut(s) 680
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 2 cut(s) 283, 583
LguI GCTCTTC 2 cut(s) 425, 626
LmnI GCTCC 1 cut(s) 492
Lsp1109I GCAGC 4 cut(s) 120, 471, 513, 562
LweI GCATC 1 cut(s) 378
MabI ACCWGGT 1 cut(s) 759
MaeI CTAG 1 cut(s) 777
MaeII ACGT 5 cut(s) 303, 342, 360, 449, 545
MaeIII GTNAC 1 cut(s) 616
MalI GATC 2 cut(s) 285, 585
MboI GATC 2 cut(s) 283, 583
MboII GAAGA 7 cut(s) 208, 247, 442, 640, 643, 712, 734
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 1 cut(s) 101
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 403
MseI TTAA 2 cut(s) 639, 814
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 6 cut(s) 97, 242, 365, 369, 404, 444
MspR9I CCNGG 4 cut(s) 11, 26, 98, 761
MvaI CCWGG 3 cut(s) 11, 26, 761
MvnI CGCG 2 cut(s) 264, 698
MwoI GCNNNNNNNGC 6 cut(s) 51, 71, 80, 432, 469, 532
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 789
NdeII GATC 2 cut(s) 283, 583
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 1 cut(s) 793
NmeAIII GCCGAG 2 cut(s) 41, 439
NmuCI GTSAC 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 559
PciSI GCTCTTC 2 cut(s) 425, 626
PcsI WCGNNNNNNNCGW 6 cut(s) 174, 309, 329, 407, 446, 551
PdiI GCCGGC 1 cut(s) 405
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 6 cut(s) 85, 110, 486, 489, 528, 577
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PsiI TTATAA 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 3 cut(s) 9, 24, 759
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 3 cut(s) 9, 24, 759
PspPI GGNCC 2 cut(s) 239, 659
PsuI RGATCY 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 560
SalI GTCGAC 2 cut(s) 305, 439
SapI GCTCTTC 2 cut(s) 425, 626
SaqAI TTAA 2 cut(s) 639, 814
SatI GCNGC 6 cut(s) 84, 109, 485, 488, 527, 576
Sau3AI GATC 2 cut(s) 283, 583
Sau96I GGNCC 2 cut(s) 239, 659
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 4 cut(s) 11, 26, 98, 761
SduI GDGCHC 1 cut(s) 560
SexAI ACCWGGT 1 cut(s) 759
SfaNI GCATC 1 cut(s) 378
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 1 cut(s) 101
SsiI CCGC 7 cut(s) 81, 84, 262, 463, 487, 490, 507
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 4 cut(s) 9, 24, 96, 759
StyI CCWWGG 2 cut(s) 87, 789
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 5 cut(s) 306, 345, 363, 452, 548
TaqI TCGA 7 cut(s) 141, 177, 306, 440, 554, 647, 674
TasI AATT 1 cut(s) 101
TauI GCSGC 2 cut(s) 86, 490
Tru1I TTAA 2 cut(s) 639, 814
Tru9I TTAA 2 cut(s) 639, 814
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 4 cut(s) 108, 484, 526, 575
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 306, 440
XspI CTAG 1 cut(s) 777
ZraI GACGTC 2 cut(s) 304, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.