Rh2DG660700

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011712
Physical Location & Seq
Reverse (-)
88733354 .. 88733782
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG660700.1

Sequence Viewer

Length: 429 bp
ATGCCTAAAACGACGCCGGCCTCGTCTCCTTCCCATTGCAAGAAGAGCAAGTCGACCGGAACGTCGTCGTCTCGGCGGTGGAGGCTGAGGGACTTGCTGCGGCGGAGCAACAGCGAAGGCGGGAAGGACTCCTTAGTGCTGCTGACGCCTTCCCTGACCTCATCGTCGAGCTCAAAGAAGCAGGTGGCTGCTAACGATCATCATCATCATCCTAATGAGAAAATGGTGGTGACGAAGGGGAAGAAGAGCTTTAATGGGTCGAGGCCGAAAGGCCCGAACGCTGTGTCGATGGCGCACGAGGTGTTCTACGCGAAGAGTAAAGAGAAAGATGGGTATAATAAGAGACAGTCGTATCTTCCTTACAGGAAAGACCTGGTGGGGTTCTTTGCTAGTGTGAACGCCATGGGAAGGACTTTCCCTACTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

142

Amino Acids

15.76

Weight (kDa)

10.48

Isoelectric Point (pI)

67.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 4 - 120 9.9e-16 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
AasI GACNNNNNNGTC 2 cut(s) 61, 163
Acc36I ACCTGC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 53
AccII CGCG 1 cut(s) 311
AciI CCGC 4 cut(s) 76, 100, 103, 120
AcyI GRCGYC 2 cut(s) 14, 146
AdeI CACNNNGTG 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 408
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 2 cut(s) 171, 249
AluI AGCT 2 cut(s) 171, 249
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 3 cut(s) 30, 75, 337
AoxI GGCC 3 cut(s) 18, 263, 271
ApeKI GCWGC 3 cut(s) 97, 139, 188
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BanII GRGCYC 1 cut(s) 173
BauI CACGAG 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 3 cut(s) 84, 126, 175
BccI CCATC 2 cut(s) 283, 323
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 3 cut(s) 30, 75, 337
BfaI CTAG 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 4 cut(s) 98, 101, 140, 189
BlsI GCNGC 4 cut(s) 99, 102, 141, 190
Bme1390I CCNGG 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 14, 146
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 3 cut(s) 84, 126, 175
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 20, 265, 273
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 17, 57
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 3 cut(s) 30, 75, 337
BsmBI CGTCTC 2 cut(s) 30, 75
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 3 cut(s) 20, 265, 273
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 196
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 4 cut(s) 76, 100, 103, 120
BspANI GGCC 3 cut(s) 20, 265, 273
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 172
BspQI GCTCTTC 2 cut(s) 38, 239
BsrDI GCAATG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 2 cut(s) 14, 146
BssSI CACGAG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 3 cut(s) 38, 239, 308
BstACI GRCGYC 2 cut(s) 14, 146
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 86, 133
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 3 cut(s) 30, 75, 337
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 45, 82, 145
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 84, 126, 175
BsuRI GGCC 3 cut(s) 20, 265, 273
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 2 cut(s) 22, 154
CsiI ACCWGGT 1 cut(s) 372
CviAII CATG 1 cut(s) 403
CviJI RGCY 7 cut(s) 20, 85, 171, 188, 249, 265, 273
CviKI_1 RGCY 7 cut(s) 20, 85, 171, 188, 249, 265, 273
DdeI CTNAG 2 cut(s) 86, 133
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraIII CACNNNGTG 1 cut(s) 301
DrdI GACNNNNNNGTC 2 cut(s) 61, 163
DseDI GACNNNNNNGTC 2 cut(s) 61, 163
Eam1104I CTCTTC 3 cut(s) 38, 239, 308
EarI CTCTTC 3 cut(s) 38, 239, 308
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 2 cut(s) 30, 75
FaeI CATG 1 cut(s) 406
FaiI YATR 2 cut(s) 336, 404
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 233, 265
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 402
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 4 cut(s) 98, 101, 140, 189
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 98, 101, 140, 189
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 294
GluI GCNGC 4 cut(s) 98, 101, 140, 189
HaeIII GGCC 3 cut(s) 20, 265, 273
HapII CCGG 2 cut(s) 17, 57
HgaI GACGC 2 cut(s) 22, 154
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 2 cut(s) 14, 146
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 17, 57
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 54, 397
Hpy8I GTNNAC 2 cut(s) 54, 397
Hpy99I CGWCG 4 cut(s) 16, 67, 70, 169
HpyAV CCTTC 6 cut(s) 39, 110, 118, 159, 229, 402
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 82, 145
HpyF3I CTNAG 2 cut(s) 86, 133
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 2 cut(s) 14, 146
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 196
LguI GCTCTTC 2 cut(s) 38, 239
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 7 cut(s) 30, 70, 167, 167, 349, 359, 386
Lsp1109I GCAGC 3 cut(s) 84, 126, 175
MabI ACCWGGT 1 cut(s) 372
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 5 cut(s) 55, 253, 256, 325, 347
MhlI GDGCHC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 6 cut(s) 31, 75, 81, 169, 255, 292
MroNI GCCGGC 1 cut(s) 16
MseI TTAA 2 cut(s) 252, 427
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 2 cut(s) 17, 57
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 45, 82, 145
NaeI GCCGGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 402
NdeII GATC 1 cut(s) 196
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 406
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 172
PciSI GCTCTTC 2 cut(s) 38, 239
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 59
PdiI GCCGGC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 99, 102, 141, 190
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspPI GGNCC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 173
SalI GTCGAC 1 cut(s) 52
SapI GCTCTTC 2 cut(s) 38, 239
SaqAI TTAA 2 cut(s) 252, 427
SatI GCNGC 4 cut(s) 98, 101, 140, 189
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 173
SetI ASST 7 cut(s) 65, 161, 173, 186, 251, 303, 375
SexAI ACCWGGT 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 213
SsiI CCGC 4 cut(s) 76, 100, 103, 120
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 65
TaqI TCGA 4 cut(s) 53, 167, 260, 287
TauI GCSGC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 252, 427
Tru9I TTAA 2 cut(s) 252, 427
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 3 cut(s) 97, 139, 188
Tsp45I GTSAC 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 53
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.