Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Reverse (-)

10674508 .. 10675724

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAAGAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATCCCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTACTTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAGTGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACGGATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGGATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGCGGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCCAACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAACTCTCCAATGATGTTTACAAATTCCTCTGAGTACCAAACTACTCCATTTCATTTCTATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCTTCTACTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTGGAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGACCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAACATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACTAGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

35.81

Weight (kDa)

6.49

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.4e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 110	2.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	3.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	2 cut(s)	122, 252
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	869
AciI	CCGC	2 cut(s)	420, 867
AclWI	GGATC	4 cut(s)	67, 112, 750, 763
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	404, 559
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	572, 684
AfiI	CCNNNNNNNGG	1 cut(s)	730
AflII	CTTAAG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	857
AgeI	ACCGGT	2 cut(s)	382, 694
AgsI	TTSAA	4 cut(s)	442, 805, 843, 937
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	9 cut(s)	114, 156, 207, 229, 286, 334, 346, 488, 764
AluI	AGCT	9 cut(s)	114, 156, 207, 229, 286, 334, 346, 488, 764
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	67, 112, 750, 763
Ama87I	CYCGRG	1 cut(s)	850
AoxI	GGCC	2 cut(s)	421, 846
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	2 cut(s)	404, 559
AsiGI	ACCGGT	2 cut(s)	382, 694
Asp700I	GAANNNNTTC	1 cut(s)	941
AspS9I	GGNCC	2 cut(s)	51, 733
AsuC2I	CCSGG	2 cut(s)	368, 737
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	850
AvaII	GGWCC	2 cut(s)	51, 733
BamHI	GGATCC	1 cut(s)	755
BbsI	GAAGAC	3 cut(s)	13, 69, 261
BbvCI	CCTCAGC	1 cut(s)	760
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	3 cut(s)	162, 460, 609
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	368, 737
BcoDI	GTCTC	1 cut(s)	50
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	3 cut(s)	660, 768, 893
BfmI	CTRYAG	2 cut(s)	157, 595
BfrI	CTTAAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	122, 252
BisI	GCNGC	2 cut(s)	259, 421
BlsI	GCNGC	2 cut(s)	260, 422
Bme1390I	CCNGG	3 cut(s)	291, 368, 737
Bme18I	GGWCC	2 cut(s)	51, 733
BmeT110I	CYCGRG	1 cut(s)	850
BmgT120I	GGNCC	2 cut(s)	51, 733
BmiI	GGNNCC	4 cut(s)	625, 735, 741, 757
BmrFI	CCNGG	3 cut(s)	291, 368, 737
BmsI	GCATC	1 cut(s)	443
BpiI	GAAGAC	3 cut(s)	13, 69, 261
BpmI	CTGGAG	2 cut(s)	130, 733
Bpu10I	CCTNAGC	1 cut(s)	760
BpuEI	CTTGAG	1 cut(s)	729
BpuMI	CCSGG	2 cut(s)	368, 737
Bsa29I	ATCGAT	2 cut(s)	142, 837
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	54, 94, 424, 849
BsaWI	WCCGGW	2 cut(s)	382, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	2 cut(s)	382, 694
Bse1I	ACTGG	3 cut(s)	113, 326, 716
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	2 cut(s)	142, 837
BseDI	CCNNGG	4 cut(s)	54, 94, 424, 849
BseGI	GGATG	2 cut(s)	434, 601
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	4 cut(s)	498, 558, 683, 774
BseNI	ACTGG	3 cut(s)	113, 326, 716
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	423, 848
BshTI	ACCGGT	2 cut(s)	382, 694
BshVI	ATCGAT	2 cut(s)	142, 837
BsiHKCI	CYCGRG	1 cut(s)	850
BsiSI	CCGG	4 cut(s)	368, 383, 695, 737
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	423, 848
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	850
Bsp143I	GATC	3 cut(s)	72, 117, 755
Bsp19I	CCATGG	2 cut(s)	94, 424
BspACI	CCGC	2 cut(s)	420, 867
BspANI	GGCC	2 cut(s)	423, 848
BspCNI	CTCAG	4 cut(s)	497, 559, 682, 773
BspDI	ATCGAT	2 cut(s)	142, 837
BspFNI	CGCG	1 cut(s)	869
BspLI	GGNNCC	4 cut(s)	625, 735, 741, 757
BspMI	ACCTGC	2 cut(s)	122, 252
BspPI	GGATC	4 cut(s)	67, 112, 750, 763
BspQI	GCTCTTC	2 cut(s)	219, 646
BspTI	CTTAAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	2 cut(s)	382, 694
BsrI	ACTGG	3 cut(s)	113, 326, 716
BssAI	RCCGGY	2 cut(s)	382, 694
BssECI	CCNNGG	4 cut(s)	54, 94, 424, 849
BssMI	GATC	3 cut(s)	72, 117, 755
BssT1I	CCWWGG	2 cut(s)	94, 424
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	921
Bst6I	CTCTTC	2 cut(s)	219, 646
BstAFI	CTTAAG	1 cut(s)	181
BstDEI	CTNAG	6 cut(s)	69, 164, 484, 567, 669, 760
BstDSI	CCRYGG	2 cut(s)	94, 424
BstF5I	GGATG	2 cut(s)	434, 601
BstFNI	CGCG	1 cut(s)	869
BstKTI	GATC	3 cut(s)	75, 120, 758
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	3 cut(s)	72, 117, 755
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	3 cut(s)	289, 366, 735
BstSFI	CTRYAG	2 cut(s)	157, 595
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	3 cut(s)	13, 69, 261
BstX2I	RGATCY	2 cut(s)	72, 755
BstYI	RGATCY	2 cut(s)	72, 755
Bsu15I	ATCGAT	2 cut(s)	142, 837
BsuRI	GGCC	2 cut(s)	423, 848
BsuTUI	ATCGAT	2 cut(s)	142, 837
BtgI	CCRYGG	2 cut(s)	94, 424
BtsCI	GGATG	2 cut(s)	434, 601
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	2 cut(s)	122, 252
Cfr10I	RCCGGY	2 cut(s)	382, 694
Cfr13I	GGNCC	2 cut(s)	51, 733
ClaI	ATCGAT	2 cut(s)	142, 837
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	571, 683
CspAI	ACCGGT	2 cut(s)	382, 694
CviAII	CATG	6 cut(s)	95, 200, 425, 521, 636, 858
CviQI	GTAC	2 cut(s)	571, 683
DdeI	CTNAG	6 cut(s)	69, 164, 484, 567, 669, 760
DpnI	GATC	3 cut(s)	74, 119, 757
DpnII	GATC	3 cut(s)	72, 117, 755
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	219, 646
EarI	CTCTTC	2 cut(s)	219, 646
Eco130I	CCWWGG	2 cut(s)	94, 424
Eco147I	AGGCCT	1 cut(s)	848
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	51, 733
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	850
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	94, 424
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	2 cut(s)	94, 424
FaeI	CATG	6 cut(s)	98, 203, 428, 524, 639, 861
FalI	AAGNNNNNCTT	3 cut(s)	30, 213, 245
FatI	CATG	6 cut(s)	94, 199, 424, 520, 635, 857
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	259, 421
FokI	GGATG	2 cut(s)	421, 588
Fsp4HI	GCNGC	2 cut(s)	259, 421
FspBI	CTAG	3 cut(s)	660, 768, 893
GluI	GCNGC	2 cut(s)	259, 421
GsuI	CTGGAG	2 cut(s)	130, 733
HaeIII	GGCC	2 cut(s)	423, 848
HapII	CCGG	4 cut(s)	368, 383, 695, 737
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	6 cut(s)	98, 203, 428, 524, 639, 861
HincII	GTYRAC	1 cut(s)	883
HindII	GTYRAC	1 cut(s)	883
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	139, 316, 373, 839
HpaII	CCGG	4 cut(s)	368, 383, 695, 737
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	161, 555, 883
Hpy188I	TCNGA	4 cut(s)	138, 410, 568, 733
Hpy188III	TCNNGA	4 cut(s)	37, 49, 852, 934
Hpy8I	GTNNAC	3 cut(s)	161, 555, 883
HpyAV	CCTTC	3 cut(s)	448, 734, 886
HpyCH4III	ACNGT	1 cut(s)	921
HpyCH4V	TGCA	3 cut(s)	278, 401, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	6 cut(s)	69, 164, 484, 567, 669, 760
Hsp92II	CATG	6 cut(s)	98, 203, 428, 524, 639, 861
Kzo9I	GATC	3 cut(s)	72, 117, 755
LguI	GCTCTTC	2 cut(s)	219, 646
LmnI	GCTCC	2 cut(s)	111, 714
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	3 cut(s)	660, 768, 893
MaeIII	GTNAC	4 cut(s)	20, 370, 697, 915
MalI	GATC	3 cut(s)	74, 119, 757
MboI	GATC	3 cut(s)	72, 117, 755
MflI	RGATCY	2 cut(s)	72, 755
MluCI	AATT	3 cut(s)	175, 404, 559
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	941
MseI	TTAA	2 cut(s)	182, 195
MslI	CAYNNNNRTG	2 cut(s)	429, 634
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	4 cut(s)	368, 383, 695, 737
MspR9I	CCNGG	3 cut(s)	291, 368, 737
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	2 cut(s)	368, 737
NcoI	CCATGG	2 cut(s)	94, 424
NdeII	GATC	3 cut(s)	72, 117, 755
NlaIII	CATG	6 cut(s)	98, 203, 428, 524, 639, 861
NlaIV	GGNNCC	4 cut(s)	625, 735, 741, 757
NmuCI	GTSAC	3 cut(s)	20, 370, 915
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	1 cut(s)	861
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	848
PciI	ACATGT	1 cut(s)	857
PciSI	GCTCTTC	2 cut(s)	219, 646
PdmI	GAANNNNTTC	1 cut(s)	941
PfeI	GAWTC	3 cut(s)	139, 316, 839
PfoI	TCCNGGA	1 cut(s)	289
PinAI	ACCGGT	2 cut(s)	382, 694
PkrI	GCNGC	2 cut(s)	260, 422
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PscI	ACATGT	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	625, 735, 741, 757
PspPI	GGNCC	2 cut(s)	51, 733
PsuI	RGATCY	2 cut(s)	72, 755
RsaI	GTAC	2 cut(s)	572, 684
RsaNI	GTAC	2 cut(s)	571, 683
RseI	CAYNNNNRTG	2 cut(s)	429, 634
SapI	GCTCTTC	2 cut(s)	219, 646
SaqAI	TTAA	2 cut(s)	182, 195
SatI	GCNGC	2 cut(s)	259, 421
Sau3AI	GATC	3 cut(s)	72, 117, 755
Sau96I	GGNCC	2 cut(s)	51, 733
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	3 cut(s)	291, 368, 737
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	2 cut(s)	157, 595
SinI	GGWCC	2 cut(s)	51, 733
SmiMI	CAYNNNNRTG	2 cut(s)	429, 634
SmlI	CTYRAG	2 cut(s)	181, 744
SmoI	CTYRAG	2 cut(s)	181, 744
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	3 cut(s)	175, 404, 559
SseBI	AGGCCT	1 cut(s)	848
SsiI	CCGC	2 cut(s)	420, 867
SspMI	CTAG	3 cut(s)	660, 768, 893
StuI	AGGCCT	1 cut(s)	848
StyD4I	CCNGG	3 cut(s)	289, 366, 735
StyI	CCWWGG	2 cut(s)	94, 424
TaaI	ACNGT	1 cut(s)	921
TaqI	TCGA	4 cut(s)	142, 810, 837, 945
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	175, 404, 559
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	139, 316, 839
Tru1I	TTAA	2 cut(s)	182, 195
Tru9I	TTAA	2 cut(s)	182, 195
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	3 cut(s)	20, 370, 915
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	3 cut(s)	20, 370, 915
TspDTI	ATGAA	3 cut(s)	365, 578, 624
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	51, 733
XapI	RAATTY	2 cut(s)	404, 559
XceI	RCATGY	1 cut(s)	861
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	941
XspI	CTAG	3 cut(s)	660, 768, 893
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.