Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

84863376 .. 84863890

Gene Structure 515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG626500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGACTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGAAATATTACCATTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

50

Amino Acids

5.45

Weight (kDa)

8.99

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 44	6.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
BbvI	GCAGC	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	120
BmsI	GCATC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	82
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	2 cut(s)	10, 59
CviKI_1	RGCY	2 cut(s)	10, 59
DdeI	CTNAG	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	98
FaiI	YATR	1 cut(s)	96
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	2 cut(s)	45, 99
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	98
LpnPI	CCDG	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	55
MboII	GAAGA	1 cut(s)	49
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	2 cut(s)	39, 108
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	33, 55
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	39, 107
PpsI	GAGTC	2 cut(s)	39, 107
PspN4I	GGNNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	58
SatI	GCNGC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	39, 108
SetI	ASST	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	54
SgeI	CNNG	6 cut(s)	27, 61, 73, 89, 93, 107
Sse9I	AATT	1 cut(s)	106
SspI	AATATT	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	1 cut(s)	106
TseI	GCWGC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.