Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425035.1

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Reverse (-)

587 .. 1336

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425035.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggaatcgaccctgtaacccacaaacccatctcccagatcctctctgactatggaaacatcactagccttccaaagcacatcggtaaccattttgggccatccttcaacaacaagttgaacatgagcaccacatttgtacctgaatcagatccatcttcggggatcacaggacttgcatacaccaatatgatgatgatgaaccccattatggagtcacaagactattcctctactagcactcttcccttcggctttctgtctcagtttcaagcaatgaatcaagacgacaatgtttcattgcctccacacttttcgaatgaagtaacttcctcttgctcatcatcatcttctcctcctgctactgatctattgagcccgcaatgtcacgcgtctgcacaagttgtcacaccgtcttcttctccttttaattggagtgagttccttctccatgaccctttttcatccgcagatcaacccaagcaagaagaagtatttcaaggactgctggcatcaccagccaatccgacagttggtaatggaattcagtctcaggcatttgaagttggatcttcatcagtcattaatggaggtccaagcttgaacaacaacaaaaatttggctaatgatcaaatagcttcttcttcttcatcttccttgagttcatttgtggacactatcttaggtcaagatagtgagatgagggcagcattgttccctgaacttttggatggatgttttgattactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

249

Amino Acids

26.56

Weight (kDa)

4.25

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	392
AciI	CCGC	2 cut(s)	380, 468
AclWI	GGATC	4 cut(s)	34, 146, 173, 577
AcsI	RAATTY	2 cut(s)	543, 616
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	161, 211, 533
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	6 cut(s)	109, 121, 272, 500, 563, 604
AluBI	AGCT	2 cut(s)	600, 638
AluI	AGCT	2 cut(s)	600, 638
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	267, 555
AlwI	GGATC	4 cut(s)	34, 146, 173, 577
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	2 cut(s)	543, 616
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	98, 593
AsuHPI	GGTGA	1 cut(s)	507
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	593
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanII	GRGCYC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	719
BccI	CCATC	4 cut(s)	38, 109, 163, 725
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	267, 555
BfaI	CTAG	2 cut(s)	66, 237
BisI	GCNGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	709
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	98, 593
BmsI	GCATC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	679
BsaBI	GATNNNNATC	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 211, 533
Bse3DI	GCAATG	3 cut(s)	282, 299, 389
Bse8I	GATNNNNATC	1 cut(s)	574
BseGI	GGATG	4 cut(s)	101, 464, 736, 740
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	3 cut(s)	161, 211, 533
BseMI	GCAATG	3 cut(s)	282, 299, 389
BseMII	CTCAG	2 cut(s)	278, 566
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	719
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	161, 211, 533
BsmAI	GTCTC	2 cut(s)	267, 555
BsnI	GGCC	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	131, 380
Bsp143I	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
BspACI	CCGC	2 cut(s)	380, 468
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	277, 565
BspFNI	CGCG	1 cut(s)	392
BspPI	GGATC	4 cut(s)	34, 146, 173, 577
BspT104I	TTCGAA	1 cut(s)	317
BsrDI	GCAATG	3 cut(s)	282, 299, 389
BssMI	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
Bst4CI	ACNGT	2 cut(s)	414, 532
Bst6I	CTCTTC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	380, 510
BstDEI	CTNAG	3 cut(s)	264, 552, 682
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	4 cut(s)	101, 464, 736, 740
BstFNI	CGCG	1 cut(s)	392
BstKTI	GATC	7 cut(s)	42, 154, 168, 370, 475, 572, 631
BstMAI	GTCTC	2 cut(s)	267, 555
BstMBI	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstPI	GGTNACC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	719
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	3 cut(s)	39, 151, 569
BstYI	RGATCY	3 cut(s)	39, 151, 569
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	101, 464, 736, 740
Cac8I	GCNNGC	2 cut(s)	380, 510
Cfr13I	GGNCC	2 cut(s)	98, 593
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	2 cut(s)	124, 452
CviJI	RGCY	8 cut(s)	69, 100, 255, 378, 521, 600, 623, 638
CviKI_1	RGCY	8 cut(s)	69, 100, 255, 378, 521, 600, 623, 638
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	264, 552, 682
DpnI	GATC	7 cut(s)	41, 153, 167, 369, 474, 571, 630
DpnII	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	593
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	2 cut(s)	127, 455
FaiI	YATR	6 cut(s)	54, 125, 181, 191, 212, 453
FatI	CATG	2 cut(s)	123, 451
FauI	CCCGC	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	3 cut(s)	88, 451, 743
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	2 cut(s)	66, 237
GluI	GCNGC	1 cut(s)	708
HaeIII	GGCC	1 cut(s)	100
HgaI	GACGC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	127, 455
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	6, 146, 215, 280
HphI	GGTGA	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	3 cut(s)	49, 151, 528
Hpy188III	TCNNGA	2 cut(s)	284, 689
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	4 cut(s)	80, 115, 259, 455
HpyCH4III	ACNGT	2 cut(s)	414, 532
HpyCH4V	TGCA	2 cut(s)	179, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	264, 552, 682
Hsp92II	CATG	2 cut(s)	127, 455
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
LpnPI	CCDG	9 cut(s)	27, 50, 156, 156, 372, 494, 531, 539, 732
Lsp1109I	GCAGC	1 cut(s)	719
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	2 cut(s)	66, 237
MaeIII	GTNAC	6 cut(s)	16, 86, 216, 325, 386, 406
MalI	GATC	7 cut(s)	41, 153, 167, 369, 474, 571, 630
MboI	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
MflI	RGATCY	3 cut(s)	39, 151, 569
MhlI	GDGCHC	2 cut(s)	131, 380
MluCI	AATT	3 cut(s)	430, 543, 616
MluI	ACGCGT	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	547, 551
MnlI	CCTC	7 cut(s)	53, 241, 315, 343, 366, 584, 696
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	2 cut(s)	429, 585
MslI	CAYNNNNRTG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
NlaIII	CATG	2 cut(s)	127, 455
NmuCI	GTSAC	3 cut(s)	216, 386, 406
NspV	TTCGAA	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	6, 146, 280
PkrI	GCNGC	1 cut(s)	709
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	98, 593
PsuI	RGATCY	3 cut(s)	39, 151, 569
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	429, 585
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	7 cut(s)	39, 151, 165, 367, 472, 569, 628
Sau96I	GGNCC	2 cut(s)	98, 593
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	131, 380
SetI	ASST	5 cut(s)	145, 595, 602, 640, 688
SfaNI	GCATC	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	3 cut(s)	430, 543, 616
SsiI	CCGC	2 cut(s)	380, 468
SspMI	CTAG	2 cut(s)	66, 237
TaaI	ACNGT	2 cut(s)	414, 532
TaqI	TCGA	2 cut(s)	9, 317
TasI	AATT	3 cut(s)	430, 543, 616
TfiI	GAWTC	3 cut(s)	6, 146, 280
Tru1I	TTAA	2 cut(s)	429, 585
Tru9I	TTAA	2 cut(s)	429, 585
TseFI	GTSAC	3 cut(s)	216, 386, 406
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	3 cut(s)	216, 386, 406
TspDTI	ATGAA	8 cut(s)	215, 288, 293, 336, 453, 564, 639, 654
VpaK11BI	GGWCC	1 cut(s)	593
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	2 cut(s)	543, 616
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	66, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.